{"id":"W4408618497","doi":"10.1128/mbio.03713-24","title":"Penton blooming, a conserved mechanism of genome delivery used by disparate microviruses","year":2025,"lang":"en","type":"article","venue":"mBio","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Common Fund; University of Toronto; National Institute of General Medical Sciences; Deutscher Akademischer Austauschdienst; Engineering and Physical Sciences Research Council; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Natural Sciences and Engineering Research Council of Canada; European Commission; National Institutes of Health; Yorkshire Forward; SLAC National Accelerator Laboratory; Wellcome Trust","keywords":"Capsid; Genome; Lytic cycle; Biology; Subfamily; DNA; Giant Virus; Gene; Genetics; Computational biology; Virus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005144799,0.00008951266,0.0001209566,0.00002460729,0.00007047402,0.00002604378,0.0001549348,0.00004496753,0.002741215],"category_scores_gemma":[0.000005420868,0.00008731132,0.00005971921,0.0001037741,0.00008149102,0.000098599,0.0001400973,0.00006243628,0.0002897711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006374426,"about_ca_system_score_gemma":0.000009385391,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003547567,"about_ca_topic_score_gemma":0.0006364343,"domain_scores_codex":[0.9994362,0.00002456835,0.0001650885,0.0001785335,0.00004768994,0.000147949],"domain_scores_gemma":[0.9997099,0.00002172194,0.00006688735,0.0001621077,0.000005579679,0.00003381427],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001542449,0.00008178343,0.000675162,0.00000715973,0.00001833349,0.00000151475,0.0001229555,0.000002925617,0.9940035,0.00005612304,0.004836332,0.0001787355],"study_design_scores_gemma":[0.0003702783,0.00003987927,0.01103821,0.00002373299,0.0000376228,0.00000290396,0.00007292099,0.00004159589,0.9373555,0.0001092377,0.05078022,0.0001278658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961857,0.00008509192,0.0004033784,0.0001875617,0.000156671,0.000128109,0.00007014139,0.00001907219,0.002764301],"genre_scores_gemma":[0.9880403,0.00004899035,0.0002269446,0.0004103241,0.000005089162,0.000007309484,0.00001542085,0.000006434052,0.01123922],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05664802,"threshold_uncertainty_score":0.9981704,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007959209633068265,"score_gpt":0.2247783243018041,"score_spread":0.2168191146687359,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}