{"id":"W4408618710","doi":"10.1128/mbio.03669-24","title":"Geographic divergence of methicillin-resistant <i>Staphylococcus aureus</i> ST5-SCC <i>mec</i> I in the aftermath of a major earthquake and tsunami: impact of a plasmid harboring heavy metal resistance genes","year":2025,"lang":"en","type":"article","venue":"mBio","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of Allergy and Infectious Diseases; Agencia Nacional de Investigación y Desarrollo; Common Fund for Commodities","keywords":"Staphylococcus aureus; Lineage (genetic); Methicillin-resistant Staphylococcus aureus; Divergence (linguistics); Plasmid; Carriage; Gene; Biology; Microbiology; Genetics; Geography; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002122851,0.0001273005,0.0001840838,0.0005058906,0.0002984082,0.0005094512,0.0001679741,0.0002317885,0.000777583],"category_scores_gemma":[0.0005083929,0.00008234735,0.0002057923,0.0006650837,0.000267418,0.0001449706,0.0003828879,0.0001993555,0.0001092914],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004330844,"about_ca_system_score_gemma":0.0003068694,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009565505,"about_ca_topic_score_gemma":0.008407065,"domain_scores_codex":[0.9998568,0.00002554493,0.00001173881,0.00005023147,0.00001795565,0.00003768444],"domain_scores_gemma":[0.9994661,0.0000810891,0.0002500718,0.00003373579,0.00009439175,0.00007463157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002646046,0.00002743472,0.9539139,0.00003994322,0.00004426133,0.0005344104,0.001125465,0.0001624337,0.0401944,0.00004525944,0.00007827748,0.00356971],"study_design_scores_gemma":[0.000002281878,0.00002712853,0.9987432,0.000003983076,0.000004819499,0.0001081206,0.0004559128,0.00006135334,0.0004386093,0.000005907678,0.0001468019,0.000001901819],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997199,0.0000473917,0.00003243504,0.000009349581,8.528293e-7,0.000002455161,0.00006562815,0.000001013398,0.000121012],"genre_scores_gemma":[0.9996485,0.00003630738,0.00005488617,0.00001094123,0.00000228589,0.000002995642,0.0001619392,0.000001142027,0.00008106098],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009565505,"threshold_uncertainty_score":0.01901966,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01224649573895159,"score_gpt":0.2785178462352222,"score_spread":0.2662713504962707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}