{"id":"W4408628201","doi":"10.1038/s44319-025-00378-9","title":"Borrelia burgdorferi lacking all cp32 prophage plasmids retains full infectivity in mice","year":2025,"lang":"en","type":"article","venue":"EMBO Reports","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Innovation Saskatchewan","keywords":"Prophage; Borrelia burgdorferi; Infectivity; Plasmid; Biology; Virology; Borrelia; Microbiology; Genetics; Bacteriophage; Virus; Gene; Escherichia coli; Antibody","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004863738,0.0009336029,0.0004307843,0.001044949,0.0002863797,0.0007556727,0.0005629009,0.000883792,0.001119096],"category_scores_gemma":[0.0002645504,0.0006702167,0.0005227821,0.000284432,0.0006804544,0.0005206058,0.0004308661,0.001901186,0.000872498],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003996247,"about_ca_system_score_gemma":0.0003977493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008161262,"about_ca_topic_score_gemma":0.0008714599,"domain_scores_codex":[0.9993856,0.00009263401,0.00006046037,0.0001234578,0.0001203375,0.0002175364],"domain_scores_gemma":[0.9992748,0.0001196192,0.0002113147,0.0001226698,0.00003972414,0.0002319907],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000359031,0.0001566277,0.0002687439,0.00002955897,0.000008857894,0.00008298457,0.00004867374,0.00007087177,0.9977914,0.0002319215,0.00005636977,0.0008951665],"study_design_scores_gemma":[0.00009011855,0.001536551,0.006469615,0.00003255773,0.00003628283,0.0005371536,0.00008929717,0.0009050082,0.9874254,0.0001557725,0.002704928,0.00001735806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934818,0.001347572,0.002132996,0.0001756985,0.00003929076,0.00004136521,0.0008794463,0.0002784131,0.00162342],"genre_scores_gemma":[0.9864363,0.001172152,0.00294216,0.0001626579,0.00002806553,0.00008575447,0.002291961,0.0001605592,0.006720251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001119096,"threshold_uncertainty_score":0.003743768,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009183646555393497,"score_gpt":0.2572164636644713,"score_spread":0.2480328171090778,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}