{"id":"W4408644877","doi":"10.1080/27694127.2025.2464986","title":"Autophagy machinery as exploited by viruses","year":2025,"lang":"en","type":"article","venue":"Autophagy Reports","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Mental Health; Natural Sciences and Engineering Research Council of Canada; National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences; Novo Nordisk Foundation Center for Basic Metabolic Research; Novo Nordisk; Agence Nationale de Recherches sur le Sida et les Hépatites Virales; Agence Nationale de la Recherche; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Styrelsen för Internationellt Utvecklingssamarbete; Helmholtz-Gemeinschaft; International Maternal Pediatric Adolescent AIDS Clinical Trials Network; Deutsche Forschungsgemeinschaft; National Science Foundation","keywords":"Autophagy; Cell biology; Lytic cycle; Biology; Cytosol; Viral replication; Mechanism (biology); ATG8; Vacuole; Virus; Virology; Biochemistry; Apoptosis","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002801288,0.0004106454,0.0006641769,0.0002932922,0.0001931341,0.00005766631,0.0001528195,0.0002622337,0.001897654],"category_scores_gemma":[0.0002772619,0.0003665539,0.0003279704,0.0006065111,0.0001475256,0.0001979024,0.0001005275,0.0003402127,0.0002220773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001262294,"about_ca_system_score_gemma":0.0005145637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002851795,"about_ca_topic_score_gemma":0.000002519288,"domain_scores_codex":[0.9972891,0.00007041026,0.000846413,0.0007744995,0.0004829186,0.0005366402],"domain_scores_gemma":[0.9980127,0.0001079219,0.0002695138,0.001156057,0.0001394628,0.0003143722],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001209665,0.003643868,0.07478801,0.000533453,0.002819991,0.03916344,0.0005308669,0.00002384435,0.4056747,0.00754674,0.4143045,0.04976089],"study_design_scores_gemma":[0.002460861,0.0003383442,0.04346259,0.000286262,0.0005036499,0.00199652,0.00010139,0.0002342138,0.6598151,0.01134127,0.2788554,0.0006044005],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9427399,0.007726648,0.0002923233,0.0008130677,0.001231346,0.000633863,0.00001307615,0.0008212698,0.04572849],"genre_scores_gemma":[0.9416098,0.0001992149,0.0002032558,0.0129451,0.0001750586,0.0001373703,0.0001303374,0.00006292367,0.04453691],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2541404,"threshold_uncertainty_score":0.9998786,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008357498702238952,"score_gpt":0.3102255174672757,"score_spread":0.3018680187650368,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}