{"id":"W4408723760","doi":"10.1093/g3journal/jkaf053","title":"<i>Fraxinus excelsior</i> updated long-read genome reveals the importance of MADS-box genes in tolerance mechanisms against ash dieback","year":2025,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Future Earth","funders":"Biotechnology and Biological Sciences Research Council; Department for Environment, Food and Rural Affairs, UK Government; Wellcome Trust","keywords":"Biology; MADS-box; Dormancy; Gene; Genetics; Transcriptome; Epigenetics; Fraxinus; Genome; Candidate gene; Arabidopsis; Botany; Gene expression; Germination","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001455462,0.0001881747,0.0002138557,0.0003978649,0.0002385396,0.0003094421,0.0001495263,0.0001404141,0.0008797295],"category_scores_gemma":[0.0001057386,0.00009958861,0.0002478869,0.0004491167,0.00008365918,0.0001284069,0.0001774041,0.0003476309,0.0002561446],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002175386,"about_ca_system_score_gemma":0.0001527088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00270225,"about_ca_topic_score_gemma":0.007161579,"domain_scores_codex":[0.999926,0.000004304424,0.000005038663,0.00003568502,0.00001371326,0.00001533762],"domain_scores_gemma":[0.9999079,0.00001802532,0.0000305647,0.00001261561,0.00001256137,0.00001847447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002693826,0.00001846749,0.007305477,0.00006068276,0.00002473576,0.000120665,0.00008820125,0.0002073662,0.9861347,0.00007617009,0.0002650868,0.005429021],"study_design_scores_gemma":[0.00002816998,0.000166631,0.8648761,0.0000307661,0.0001473357,0.000609136,0.000183007,0.002012432,0.1156714,0.0001711834,0.01608069,0.00002313225],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.983833,0.0003657255,0.001676141,0.00005777238,0.00001396043,0.00001547493,0.01297455,0.0001408559,0.0009223908],"genre_scores_gemma":[0.9270156,0.0004661246,0.008926748,0.0002077253,0.00002409654,0.00003559625,0.05953,0.0001086765,0.003685421],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00270225,"threshold_uncertainty_score":0.005373001,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007488584593611848,"score_gpt":0.2232340307555939,"score_spread":0.215745446161982,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}