{"id":"W4408826168","doi":"10.1371/journal.ppat.1012964","title":"Dissecting transmission to understand parasite evolution","year":2025,"lang":"en","type":"review","venue":"PLoS Pathogens","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canada Excellence Research Chairs, Government of Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Virulence; Transmission (telecommunications); Parasite hosting; Abiotic component; Host (biology); Biology; Effector; Evolutionary biology; Ecology; Genetics; Immunology; Computer science; Gene; Telecommunications","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008989688,0.001330265,0.001674223,0.002450275,0.0003678204,0.001403002,0.001568733,0.002316308,0.003588099],"category_scores_gemma":[0.001274002,0.000413985,0.0006519653,0.002142311,0.001518928,0.003616946,0.001143578,0.002814703,0.002882181],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00146378,"about_ca_system_score_gemma":0.001533481,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001801628,"about_ca_topic_score_gemma":0.001932015,"domain_scores_codex":[0.9997588,0.00005760172,0.00002330022,0.0000610493,0.0000712634,0.00002799402],"domain_scores_gemma":[0.9993966,0.0003372422,0.00006441668,0.00003139376,0.000108843,0.00006139149],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005952104,0.0000521976,0.0003433528,0.02283376,0.0001698215,0.0002263586,0.0001796247,0.001632398,0.004290404,0.04908635,0.04177569,0.8793505],"study_design_scores_gemma":[0.000007620628,0.00004412966,0.0005776701,0.002815656,0.00007523163,0.0005318717,0.00008277595,0.0002858545,0.0006469043,0.01525139,0.9796554,0.00002549736],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00008108395,0.9978188,0.0004876536,0.0005433776,0.0002828616,0.000002030751,0.00001195445,0.00001042016,0.0007618203],"genre_scores_gemma":[0.0009071816,0.9975479,0.000420607,0.0002902084,0.000262343,0.000004878897,0.00002221402,0.000003820787,0.0005407651],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003588099,"threshold_uncertainty_score":0.01200342,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02459114135096672,"score_gpt":0.3202715897678681,"score_spread":0.2956804484169014,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}