{"id":"W4408846237","doi":"10.1093/g3journal/jkaf066","title":"Chromosome-level genome assembly of a doubled haploid brook trout ( <i>Salvelinus fontinalis</i> )","year":2025,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"CelluForce (Canada); McGill University; Parks Canada; Concordia University; McGill Genome Centre; Université Laval","funders":"Canada Foundation for Innovation","keywords":"Salvelinus; Trout; Fontinalis; Biology; Salmo; Ploidy; Genome; Chromosome; Zoology; Genetics; Sequence assembly; Evolutionary biology; Fishery; Gene; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003109722,0.0005546986,0.0006794884,0.0002062769,0.0002127564,0.00005485161,0.0008238099,0.0003390182,0.0000201114],"category_scores_gemma":[0.00001426149,0.000575554,0.0004026409,0.0003592866,0.0002531808,0.000001522876,0.0007135693,0.0001380733,0.00001729296],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004747101,"about_ca_system_score_gemma":0.0004120642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003730954,"about_ca_topic_score_gemma":0.0001010962,"domain_scores_codex":[0.997097,0.00009924631,0.0008769779,0.0008945848,0.000296462,0.0007357123],"domain_scores_gemma":[0.997853,0.00003533103,0.0003258352,0.001169967,0.0004531627,0.0001627185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001295809,0.0001426708,0.004986524,0.0001337965,0.0005691481,0.000004185175,0.0001378127,0.002217939,0.9253301,0.0001751002,0.0005184624,0.06565469],"study_design_scores_gemma":[0.001827119,0.0004142731,0.007325328,0.00002793432,0.000252245,0.00002131972,0.0001947815,0.0001592911,0.5904785,0.0002340213,0.3983671,0.0006981009],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5578914,0.4342095,0.002513462,0.0001433131,0.0005187715,0.0005541908,0.0002746125,0.0000152851,0.003879429],"genre_scores_gemma":[0.9010989,0.08416201,0.00855824,0.0004930429,0.0004934087,0.0001040922,0.000142679,0.00008895842,0.004858635],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3978486,"threshold_uncertainty_score":0.9996696,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0175869204958432,"score_gpt":0.2518185365314478,"score_spread":0.2342316160356046,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}