{"id":"W4408846260","doi":"10.1093/sysbio/syaf021","title":"Massive Inter-species Introgression Overwhelms Phylogenomic Relationships Among Jaguar, Lion, and Leopard","year":2025,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council","keywords":"Jaguar; Leopard; Biology; Introgression; Panthera; Evolutionary biology; Coalescent theory; Phylogenetic tree; Monophyly; Phylogenetics; Clade; Topology (electrical circuits); Zoology; Genetics; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003607644,0.0003255891,0.0004786263,0.001266435,0.0006840935,0.001075731,0.0003204296,0.0004229207,0.00103309],"category_scores_gemma":[0.000863315,0.0003903586,0.0005175963,0.0009752607,0.0004223688,0.0006687585,0.0006935466,0.0007092853,0.0002761405],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003213734,"about_ca_system_score_gemma":0.0001851442,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002001618,"about_ca_topic_score_gemma":0.005653844,"domain_scores_codex":[0.9996966,0.00005108185,0.0000217436,0.0001448304,0.00003418821,0.00005165354],"domain_scores_gemma":[0.9993178,0.0002994608,0.00016384,0.00009350567,0.00004175225,0.00008374092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000787438,0.00006433716,0.3397586,0.0003044899,0.0003656087,0.0007909859,0.001426248,0.001731639,0.6340523,0.0005097822,0.0002416112,0.01996691],"study_design_scores_gemma":[0.00001547359,0.0001174654,0.9826852,0.00002709542,0.0001530847,0.000715616,0.0006329878,0.004509569,0.009100688,0.0004391485,0.001581585,0.00002217519],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985901,0.0001894517,0.0005574159,0.00002283497,0.000001636745,0.00000241545,0.0002370334,0.00003751228,0.0003615772],"genre_scores_gemma":[0.996296,0.0001525693,0.001600083,0.00007447699,0.000003946372,0.000008548325,0.001695911,0.00002391899,0.0001444822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002001618,"threshold_uncertainty_score":0.003979981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01484577405183628,"score_gpt":0.242617631952506,"score_spread":0.2277718579006697,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}