{"id":"W4408882786","doi":"10.21423/aabppro20249168","title":"Understanding contagious transmission of Mannheimia haemolytica in feedlot calves by leveraging whole genome sequencing of a unique isolate collection","year":2025,"lang":"en","type":"article","venue":"American Association of Bovine Practitioners Conference Proceedings","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Transmission (telecommunications); Feedlot; Biology; Genome; DNA sequencing; Genetics; Animal science; Gene; Computer science; Telecommunications","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005174825,0.0002713726,0.0002704065,0.000754332,0.0003399766,0.0008987148,0.0002552424,0.00040967,0.0003417235],"category_scores_gemma":[0.0007908002,0.0001473049,0.000203022,0.0007474454,0.0001457789,0.0005073294,0.0003579731,0.0004060966,0.0001314468],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005190537,"about_ca_system_score_gemma":0.0007110185,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01535879,"about_ca_topic_score_gemma":0.03493279,"domain_scores_codex":[0.9996589,0.00005720571,0.00002065101,0.0000927865,0.00007901468,0.00009138492],"domain_scores_gemma":[0.9996247,0.0001094442,0.0001242062,0.0000218196,0.00007130858,0.00004852436],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000243179,0.000232169,0.4826957,0.0002643407,0.0001269644,0.0002754476,0.001385929,0.001604749,0.478361,0.0003777813,0.0002741297,0.03415855],"study_design_scores_gemma":[0.000005587593,0.0002113299,0.9787554,0.00005479721,0.0000823697,0.0003628666,0.001440457,0.001980424,0.01441767,0.0001636184,0.002513239,0.00001232089],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944724,0.0005553006,0.003468561,0.00008064134,0.000004860893,0.00002210443,0.000919362,0.00001582451,0.000460876],"genre_scores_gemma":[0.9877998,0.001074357,0.007913268,0.00013761,0.000009829848,0.00001757362,0.002554387,0.00001097596,0.0004821831],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01535879,"threshold_uncertainty_score":0.0305388,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02925702903088695,"score_gpt":0.2783340325566661,"score_spread":0.2490770035257792,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}