{"id":"W4408882786","doi":"10.21423/aabppro20249168","title":"Understanding contagious transmission of Mannheimia haemolytica in feedlot calves by leveraging whole genome sequencing of a unique isolate collection","year":2025,"lang":"en","type":"article","venue":"American Association of Bovine Practitioners Conference Proceedings","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Transmission (telecommunications); Feedlot; Biology; Genome; DNA sequencing; Genetics; Animal science; Gene; Computer science; Telecommunications","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005570707,0.0001351242,0.0004377515,0.0005191053,0.0001246916,0.00002365223,0.0001037622,0.0001324221,0.0001105494],"category_scores_gemma":[0.0002917077,0.0001485469,0.00008579646,0.0009203338,0.0002392398,0.0002676095,0.00003562331,0.0002913115,0.00000233014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009595971,"about_ca_system_score_gemma":0.000511556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003018729,"about_ca_topic_score_gemma":0.00004948067,"domain_scores_codex":[0.9987656,0.0001010207,0.000554833,0.0002390226,0.00009208325,0.0002474636],"domain_scores_gemma":[0.9983094,0.0002101525,0.0008523852,0.00006650337,0.0005349674,0.00002660912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003009448,0.0001669346,0.01130257,0.0001227075,0.0001955328,2.334293e-7,0.001376874,0.00002748355,0.9815895,0.00296406,0.001692762,0.0002603932],"study_design_scores_gemma":[0.008053984,0.002106704,0.02584644,0.001884667,0.0005305153,0.00002435312,0.05427623,0.002397917,0.8898005,0.005378213,0.008731415,0.0009690448],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9694992,0.0001937229,0.02178104,0.002953839,0.00006618422,0.0004678227,0.00009423216,0.00003856838,0.004905384],"genre_scores_gemma":[0.9982393,0.0003248489,0.0001631724,0.00006611426,0.000003158927,0.00001941199,0.00007745989,0.000009226125,0.001097298],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09178898,"threshold_uncertainty_score":0.6057566,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02925702903088695,"score_gpt":0.2783340325566661,"score_spread":0.2490770035257792,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}