{"id":"W4408977426","doi":"10.1093/biolre/ioaf056","title":"From sperm to offspring: epigenetic markers for dairy herd fertility","year":2025,"lang":"en","type":"article","venue":"Biology of Reproduction","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","funders":"","keywords":"Biology; Epigenetics; Fertility; Offspring; Genetics; DNA methylation; Quantitative trait locus; Sperm; Single-nucleotide polymorphism; Pregnancy; Population; Genotype; Gene; Demography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002083994,0.0001112786,0.0001563731,0.000042485,0.00004911765,0.000003160637,0.0001592376,0.0001616094,0.00001554235],"category_scores_gemma":[0.0002394404,0.0001105465,0.00007768342,0.00007600243,0.0001143988,0.00000118287,0.00007635551,0.00004114775,0.000003332958],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001054167,"about_ca_system_score_gemma":0.00006147849,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006719023,"about_ca_topic_score_gemma":0.00001502739,"domain_scores_codex":[0.9989045,0.00004556952,0.0002301724,0.0006318071,0.00003207975,0.0001558723],"domain_scores_gemma":[0.9991878,0.00001611931,0.00006335034,0.0006003798,0.00009530905,0.00003707312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001216737,0.0001222248,0.02165356,0.00005062313,0.0001748029,3.247627e-8,0.00009320694,0.000254701,0.8482869,0.0009178009,0.004110325,0.1231191],"study_design_scores_gemma":[0.000340032,0.0004663341,0.3843367,0.00001170622,0.00002783383,5.261973e-7,0.00007307743,0.000003491887,0.5004969,0.007477419,0.1066505,0.0001155753],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9362716,0.002335954,0.05865677,0.0006462957,0.001117186,0.0004210441,0.00003468638,0.00001230065,0.0005041801],"genre_scores_gemma":[0.9567128,0.00002831389,0.04130232,0.00007723219,0.0003679856,0.00004757057,0.0001088847,0.000008334128,0.001346568],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3626831,"threshold_uncertainty_score":0.4507955,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01414509187666499,"score_gpt":0.2784312770207479,"score_spread":0.2642861851440829,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}