{"id":"W4409000158","doi":"10.1128/mra.01239-24","title":"Whole-genome sequencing of the first <i>Candida auris</i> clinical isolate from a patient with sepsis in Palestine","year":2025,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Université Laval; Montreal Heart Institute","funders":"","keywords":"Candida auris; Biology; Phylogenetic tree; DNA sequencing; Genome; Clade; Sepsis; Genetics; Microbiology; Gene; Antifungal","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000276036,0.000382511,0.0003927113,0.000725604,0.000682537,0.001115834,0.0002184071,0.0007505146,0.001052631],"category_scores_gemma":[0.0007422259,0.0002084756,0.0004489806,0.0008823103,0.0002649369,0.0001336326,0.0004905153,0.0008336036,0.0004679648],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000422928,"about_ca_system_score_gemma":0.0007428094,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01205787,"about_ca_topic_score_gemma":0.01446864,"domain_scores_codex":[0.9997595,0.00002573414,0.00001747011,0.00007669149,0.00006818689,0.0000524414],"domain_scores_gemma":[0.9997252,0.00008038725,0.00003660043,0.00002590932,0.00007766999,0.00005419949],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001470504,0.0003104203,0.3572036,0.0007074209,0.0004150917,0.02267801,0.004031608,0.002940468,0.5358703,0.0005846952,0.01010674,0.0636811],"study_design_scores_gemma":[0.00009034359,0.0003355283,0.9157504,0.0003797728,0.0002324234,0.01561236,0.00348449,0.001873703,0.02791781,0.0003252266,0.03396079,0.00003714673],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9790299,0.0008717728,0.001051571,0.0005482293,0.00006501859,0.00005716792,0.01626605,0.00005030854,0.002060043],"genre_scores_gemma":[0.978735,0.0008288496,0.003639777,0.0006298655,0.00004305097,0.0000334968,0.01470773,0.00007358864,0.001308665],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01205787,"threshold_uncertainty_score":0.02397537,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01438823114703945,"score_gpt":0.2661415219259666,"score_spread":0.2517532907789271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}