{"id":"W4409086163","doi":"10.1080/19490976.2025.2481178","title":"Effects of bacteriophages on gut microbiome functionality","year":2025,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Israel Science Foundation; European Commission; Canadian Institute for Advanced Research","keywords":"Biology; Microbiome; Commensalism; Gut microbiome; Gut flora; Immunity; Genome; Disease; Gut bacteria; Human microbiome; Host (biology); Microbiology; Bacteria; Immunology; Immune system; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001300852,0.0005695504,0.001341626,0.0001954265,0.0001426996,0.00005740736,0.0005329,0.000357539,0.003623965],"category_scores_gemma":[0.00005697733,0.000477826,0.0008057543,0.0004663542,0.0002360384,0.0001339188,0.000455217,0.0004094394,0.002105933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003431083,"about_ca_system_score_gemma":0.00007297538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002590039,"about_ca_topic_score_gemma":0.00003699916,"domain_scores_codex":[0.9979027,0.0001986268,0.0007050058,0.0006928334,0.0001233808,0.0003774801],"domain_scores_gemma":[0.9985044,0.0004225798,0.0004289308,0.0005439234,0.00001776667,0.00008237789],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001637318,0.0004400552,0.000003106947,0.02192865,0.00023064,0.00001613509,0.00004130494,0.000001116292,0.3386573,0.00001953271,0.02997196,0.6086739],"study_design_scores_gemma":[0.0001562953,0.00006498885,0.0008309963,0.009874806,0.0004976616,0.00003422038,0.000002422934,4.989226e-8,0.003276333,0.00000717868,0.9848921,0.0003629985],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0009358217,0.9915113,0.00003013545,0.00003184491,0.001609029,0.001063511,0.0005209306,0.00007001354,0.004227448],"genre_scores_gemma":[0.0001044858,0.978891,0.0002877339,0.0001696127,0.0001065067,0.00008446039,0.0002413202,0.00004491269,0.02006993],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9549201,"threshold_uncertainty_score":0.9997674,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009827630016377504,"score_gpt":0.2795854396233126,"score_spread":0.2697578096069351,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}