{"id":"W4409155833","doi":"10.1101/2025.03.30.645770","title":"UnitRefine: A Community Toolbox for Automated Spike Sorting Curation","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Image Processing and 3D Reconstruction","field":"Computer Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Discovery Centre","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Deutsche Forschungsgemeinschaft; UK Research and Innovation","keywords":"Toolbox; Spike (software development); Computer science; Sorting; Data curation; Spike sorting; Data science; Artificial intelligence; Natural language processing; Software engineering; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005129057,0.003849577,0.001871193,0.003690608,0.0009527227,0.00268154,0.00470062,0.00189465,0.04717918],"category_scores_gemma":[0.02058821,0.00156636,0.002312335,0.002340606,0.0009168542,0.002954541,0.00480384,0.003652791,0.03979688],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009584319,"about_ca_system_score_gemma":0.002711763,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003048403,"about_ca_topic_score_gemma":0.006876674,"domain_scores_codex":[0.9978306,0.000485297,0.0002005635,0.0006299869,0.0006817385,0.0001719138],"domain_scores_gemma":[0.9925625,0.003125483,0.0004988478,0.001939563,0.001485225,0.0003884484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001086353,0.0002536959,0.0026988,0.002139532,0.0005987264,0.0005193899,0.0005534632,0.01913122,0.02751606,0.01523704,0.656224,0.2740418],"study_design_scores_gemma":[0.00053268,0.0002034265,0.00401074,0.0004933256,0.000116153,0.000831129,0.0001544397,0.5419141,0.08100534,0.07505358,0.2952127,0.0004724736],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.001641624,0.0002186976,0.5317909,0.0001906679,0.0001605094,0.0001496551,0.01157142,0.4527805,0.00149608],"genre_scores_gemma":[0.04456143,0.0005393968,0.7394732,0.0009263052,0.0001599415,0.002319765,0.04933557,0.1548632,0.007821352],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04717918,"threshold_uncertainty_score":0.1578301,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01959263443389107,"score_gpt":0.2535607066143429,"score_spread":0.2339680721804518,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}