{"id":"W4409161212","doi":"10.3390/v17040527","title":"Genetic and Phenotypic Investigations of Viral Subpopulations Detected in Different Tissues of Laying Hens Following Infectious Bronchitis Virus Infection","year":2025,"lang":"en","type":"article","venue":"Viruses","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Cumming School of Medicine, University of Calgary; Egg Farmers of Canada","keywords":"Biology; Infectious bronchitis virus; Virus; Hypervariable region; Gene; Virology; Avian infectious bronchitis; Avian infectious bronchitis virus; Coding region; Phylogenetic tree; Population; Phenotype; Genetics; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Pathology; Disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001350346,0.0002098485,0.0002087563,0.0006775099,0.0002634354,0.0003153028,0.0001059117,0.0002410567,0.0004222431],"category_scores_gemma":[0.0002669152,0.0001459074,0.000212809,0.0002641316,0.0002285581,0.0001729237,0.0001630113,0.0002482372,0.0001381605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001830755,"about_ca_system_score_gemma":0.0001154033,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001861178,"about_ca_topic_score_gemma":0.002990166,"domain_scores_codex":[0.9998684,0.00001292536,0.00001025525,0.00005325962,0.00002724137,0.00002788975],"domain_scores_gemma":[0.9998067,0.00003476227,0.00006735513,0.00000816809,0.00004047457,0.00004249935],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001992124,0.00002309876,0.06055648,0.00005565227,0.00003263209,0.0001305813,0.0002481909,0.0001543039,0.9367347,0.0000289978,0.00002446745,0.001811684],"study_design_scores_gemma":[0.000004498177,0.0004461917,0.9098279,0.00001430167,0.00005116605,0.0005005833,0.000593418,0.001461762,0.08657327,0.00004151907,0.0004670397,0.00001844444],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987751,0.0001498359,0.000508072,0.000004360726,0.000002832939,0.00001151055,0.0003598615,0.000007375239,0.0001809914],"genre_scores_gemma":[0.9971719,0.0001378531,0.001474443,0.00002309824,0.000003086301,0.00002515251,0.0007567141,0.000009333171,0.0003984364],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001861178,"threshold_uncertainty_score":0.003700674,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02663880053604428,"score_gpt":0.2616447384922701,"score_spread":0.2350059379562258,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}