{"id":"W4409161525","doi":"10.1101/2025.04.01.646613","title":"Population structure and domestication history of the Javan banteng ( <i>Bos javanicus javanicus</i> )","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Livestock Farming and Management","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Trinity College","funders":"Ministry of Environment","keywords":"Domestication; Geography; Population; Ecology; Biology; Demography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000304649,0.0001596426,0.0002137398,0.0006611676,0.000299324,0.0003481051,0.000212825,0.0001188937,0.000962351],"category_scores_gemma":[0.0002961242,0.00008655163,0.0001745956,0.0005802142,0.0002666888,0.0001395788,0.0002187393,0.0002112096,0.0001385642],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002522822,"about_ca_system_score_gemma":0.00009649664,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005782784,"about_ca_topic_score_gemma":0.01089075,"domain_scores_codex":[0.9997936,0.00004026415,0.00001359066,0.00009790606,0.00002342373,0.00003117345],"domain_scores_gemma":[0.9997881,0.0000390142,0.00007825781,0.00002669351,0.00004025502,0.0000276259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004067007,0.00009377865,0.8819022,0.00005939875,0.0002288704,0.0004138589,0.001873857,0.0004190794,0.09892592,0.0001500157,0.0001390728,0.0153872],"study_design_scores_gemma":[0.000003853384,0.00003237995,0.9986598,0.000004020302,0.00001793034,0.0001162604,0.000239402,0.0002213494,0.0003461743,0.00001600648,0.000339707,0.000003076942],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996036,0.00002924703,0.00009732792,0.000003890845,9.558906e-7,0.00000194038,0.00007495964,0.000002078143,0.0001860237],"genre_scores_gemma":[0.9992085,0.00002689176,0.0002635201,0.000008107667,0.000001458635,0.000005212719,0.0003449603,0.000003528316,0.0001379283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005782784,"threshold_uncertainty_score":0.01149827,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009888985223535795,"score_gpt":0.1842501693723656,"score_spread":0.1743611841488298,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}