{"id":"W4409183112","doi":"10.1111/myc.70050","title":"Resolving Phylogenetic Relationships Within the Trichophyton mentagrophytes Complex: A RADseq Genomic Approach Challenges Status of ‘Terbinafine‐Resistant’ Trichophyton indotineae as Distinct Species","year":2025,"lang":"en","type":"article","venue":"Mycoses","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Akademie Věd České Republiky","keywords":"Trichophyton; Biology; Phylogenetic tree; Dermatophyte; Evolutionary biology; Genotype; Genetics; Species complex; DNA sequencing; DNA; Microbiology; Antifungal; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002969943,0.0004800752,0.0007380313,0.0003519313,0.0004655726,0.00007524809,0.0003224154,0.0001381322,0.00002421415],"category_scores_gemma":[0.0009323548,0.0003477137,0.0002872299,0.0009812691,0.0002839875,0.00008345268,0.0002055036,0.0004087628,0.00002900688],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002780688,"about_ca_system_score_gemma":0.0003211464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001861015,"about_ca_topic_score_gemma":0.0000472117,"domain_scores_codex":[0.9970083,0.0002974367,0.0007819658,0.0006697584,0.0005745043,0.0006680724],"domain_scores_gemma":[0.9972953,0.0009355949,0.0004430818,0.0008933542,0.0001851473,0.0002474976],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0018848,0.004866076,0.8627763,0.002984509,0.00223817,0.0002433455,0.004033065,0.0003133102,0.09410486,0.01309994,0.008399315,0.00505636],"study_design_scores_gemma":[0.004007402,0.000615744,0.9688929,0.0003309406,0.00103024,0.00003141136,0.002331421,0.0001715192,0.005481805,0.001636924,0.01529117,0.00017857],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9075401,0.03909517,0.00006502708,0.0004166644,0.0002271103,0.001392967,0.0002255725,0.0001114854,0.0509259],"genre_scores_gemma":[0.992687,0.00279045,0.001278508,0.0002181426,0.0001735283,0.0001549763,0.0002019943,0.00005778032,0.002437574],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1061166,"threshold_uncertainty_score":0.9998975,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04040597554918367,"score_gpt":0.2646616957772585,"score_spread":0.2242557202280748,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}