{"id":"W4409183112","doi":"10.1111/myc.70050","title":"Resolving Phylogenetic Relationships Within the Trichophyton mentagrophytes Complex: A RADseq Genomic Approach Challenges Status of ‘Terbinafine‐Resistant’ Trichophyton indotineae as Distinct Species","year":2025,"lang":"en","type":"article","venue":"Mycoses","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Akademie Věd České Republiky","keywords":"Trichophyton; Biology; Phylogenetic tree; Dermatophyte; Evolutionary biology; Genotype; Genetics; Species complex; DNA sequencing; DNA; Microbiology; Antifungal; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001657926,0.0005241348,0.0006391811,0.001415486,0.001037096,0.001971717,0.0007171684,0.0008423136,0.001446737],"category_scores_gemma":[0.002816628,0.0001937833,0.0008812005,0.001436956,0.0003226468,0.001002634,0.0008806133,0.001147396,0.0007706081],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006201601,"about_ca_system_score_gemma":0.0007259861,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001812442,"about_ca_topic_score_gemma":0.004103911,"domain_scores_codex":[0.9986565,0.0003249395,0.0001361291,0.0004837204,0.0002240946,0.0001746556],"domain_scores_gemma":[0.9981439,0.0005654821,0.000660421,0.0001795189,0.0002681416,0.0001825249],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007620985,0.0002993557,0.1892612,0.001276413,0.0004394628,0.001052711,0.002085718,0.002987526,0.6959695,0.001617281,0.001985585,0.1022632],"study_design_scores_gemma":[0.00007477223,0.000913773,0.6952764,0.0008320006,0.001048729,0.008551791,0.007175698,0.03343452,0.1721677,0.004673419,0.07567585,0.0001753524],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9492807,0.003052777,0.03952508,0.001044965,0.00009704492,0.0001674622,0.003356685,0.0002288509,0.003246315],"genre_scores_gemma":[0.9224687,0.0008460273,0.06895079,0.0005201105,0.00004572215,0.00007433777,0.006476743,0.00008375398,0.0005338011],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001971717,"threshold_uncertainty_score":0.008768082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04040597554918367,"score_gpt":0.2646616957772585,"score_spread":0.2242557202280748,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}