{"id":"W4409246424","doi":"10.1038/s41597-025-04921-0","title":"Whole Genome Sequence of the gut commensal protist Tritrichomonas musculus isolated from laboratory mice","year":2025,"lang":"en","type":"article","venue":"Scientific Data","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"NHLBI Division of Intramural Research; Canadian Institutes of Health Research; U.S. Department of Health and Human Services; National Institutes of Health; Government of Canada; National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Biology; Genome; Gene; Axenic; Genetics; Giardia; Model organism; Protist; Entamoeba; Giardia lamblia; Whole genome sequencing; Computational biology; Entamoeba histolytica; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002361268,0.000608943,0.0004520382,0.001330889,0.0005794888,0.0004225105,0.0003172634,0.000553223,0.002872185],"category_scores_gemma":[0.0003896829,0.0002195674,0.0006546602,0.002109017,0.000174324,0.0002004581,0.0002303406,0.0006639684,0.002267131],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003553236,"about_ca_system_score_gemma":0.0008486167,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005983471,"about_ca_topic_score_gemma":0.007142941,"domain_scores_codex":[0.9998732,0.0000132353,0.000014128,0.00004724566,0.00003335754,0.00001873263],"domain_scores_gemma":[0.9997748,0.00004105145,0.00006269031,0.00002243664,0.00005778035,0.00004128773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008700307,0.00005561979,0.003472266,0.0008602715,0.00007266922,0.0003104703,0.0001855166,0.0007299299,0.9785197,0.0002540285,0.003431731,0.01123768],"study_design_scores_gemma":[0.0003013468,0.001207304,0.5176538,0.0005704777,0.001186669,0.002148482,0.0005883418,0.005212823,0.2412457,0.001140162,0.2285617,0.0001831706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.4322591,0.002967021,0.0138726,0.0003160268,0.00012032,0.0001841998,0.5449944,0.0009174629,0.004368882],"genre_scores_gemma":[0.1314798,0.002027299,0.02648179,0.0001905844,0.00003093306,0.0002065693,0.8358652,0.0003968825,0.003320914],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.005983471,"threshold_uncertainty_score":0.01189727,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02464295819662421,"score_gpt":0.2698881851833915,"score_spread":0.2452452269867673,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}