{"id":"W4409246424","doi":"10.1038/s41597-025-04921-0","title":"Whole Genome Sequence of the gut commensal protist Tritrichomonas musculus isolated from laboratory mice","year":2025,"lang":"en","type":"article","venue":"Scientific Data","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"NHLBI Division of Intramural Research; Canadian Institutes of Health Research; U.S. Department of Health and Human Services; National Institutes of Health; Government of Canada; National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Biology; Genome; Gene; Axenic; Genetics; Giardia; Model organism; Protist; Entamoeba; Giardia lamblia; Whole genome sequencing; Computational biology; Entamoeba histolytica; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003855864,0.0001114367,0.00013079,0.00003336342,0.0002463122,0.00006623722,0.00144356,0.00006603638,0.000008316894],"category_scores_gemma":[0.0001341176,0.00008673508,0.00004049342,0.0003982226,0.000378302,0.000002186446,0.001566703,0.00007250959,0.000008472253],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001101022,"about_ca_system_score_gemma":0.0002348258,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001025168,"about_ca_topic_score_gemma":0.0001638988,"domain_scores_codex":[0.9988261,0.00007788932,0.0002198224,0.0005688572,0.0001298121,0.0001775565],"domain_scores_gemma":[0.9978735,0.00001701528,0.00009771323,0.00181583,0.0001640179,0.00003189134],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001501046,0.00004153535,0.001651825,0.00001204269,0.00006641195,4.464509e-7,0.00004245888,0.000007316944,0.9728431,0.00001913932,0.02487542,0.0004253032],"study_design_scores_gemma":[0.0005055701,0.00003723629,0.02833704,0.00002660948,0.00006274562,6.852331e-7,0.0001347992,0.000259168,0.07160614,0.0002098232,0.8986443,0.000175943],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9586757,0.004223955,0.0002250028,0.0006332739,0.001888123,0.0004493436,0.03339022,0.000004812358,0.0005096099],"genre_scores_gemma":[0.9932769,0.00005068878,0.0004733181,0.0002232781,0.00006391266,0.0000126941,0.00330013,0.000008667956,0.002590439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.901237,"threshold_uncertainty_score":0.3536954,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02464295819662421,"score_gpt":0.2698881851833915,"score_spread":0.2452452269867673,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}