{"id":"W4409333248","doi":"10.1128/spectrum.00481-25","title":"Transformation of <i>Gardnerella vaginalis</i> with a <i>Bifidobacterium-Escherichia coli</i> shuttle vector plasmid","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Gardnerella vaginalis; Plasmid; Biology; Spectinomycin; Shuttle vector; Microbiology; Microbiome; Transformation (genetics); Bifidobacterium; Lactobacillus; Genetics; Bacterial vaginosis; Gene; Antibiotic resistance; Bacteria; Vector (molecular biology); Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005792549,0.0007524176,0.0006588833,0.0005221977,0.0002845654,0.0005818263,0.0007222043,0.0004572061,0.001794966],"category_scores_gemma":[0.0004111777,0.0003462997,0.0006377453,0.0007298051,0.0002461903,0.0002275379,0.000621665,0.001067253,0.001464664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003492546,"about_ca_system_score_gemma":0.0003309538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001483104,"about_ca_topic_score_gemma":0.001350267,"domain_scores_codex":[0.9993536,0.0001120847,0.00009051683,0.0001432021,0.0001873559,0.0001131595],"domain_scores_gemma":[0.999681,0.00007836399,0.00009035411,0.00005617046,0.0000511238,0.00004307149],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004263094,0.00005023876,0.0001773457,0.0000801904,0.000007235847,0.00006318303,0.00002819023,0.00004438306,0.9979079,0.0001199471,0.0001419547,0.001336924],"study_design_scores_gemma":[0.00002854468,0.0004294242,0.004124975,0.00003344176,0.00004430929,0.000549658,0.00005998628,0.001426442,0.9814411,0.00006674246,0.01177489,0.00002041873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.882516,0.00190687,0.09031336,0.0004805968,0.000515159,0.001716933,0.01252555,0.001892104,0.00813347],"genre_scores_gemma":[0.8221712,0.001929955,0.08647744,0.0002894165,0.00006660011,0.000973868,0.05941924,0.0006817848,0.0279904],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001794966,"threshold_uncertainty_score":0.006004751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006852519502062556,"score_gpt":0.2359935284867029,"score_spread":0.2291410089846403,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}