{"id":"W4409333248","doi":"10.1128/spectrum.00481-25","title":"Transformation of <i>Gardnerella vaginalis</i> with a <i>Bifidobacterium-Escherichia coli</i> shuttle vector plasmid","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Gardnerella vaginalis; Plasmid; Biology; Spectinomycin; Shuttle vector; Microbiology; Microbiome; Transformation (genetics); Bifidobacterium; Lactobacillus; Genetics; Bacterial vaginosis; Gene; Antibiotic resistance; Bacteria; Vector (molecular biology); Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003454595,0.0002871224,0.00050705,0.0003438079,0.000201393,0.00002008415,0.0003369482,0.0003409433,0.0006501047],"category_scores_gemma":[0.00004376264,0.0002366581,0.0001252689,0.0006592819,0.0008226385,0.000126938,0.00006449155,0.0005865057,0.0003565298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001134771,"about_ca_system_score_gemma":0.0002722163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002086493,"about_ca_topic_score_gemma":0.0001257188,"domain_scores_codex":[0.9980975,0.0003261377,0.0004574677,0.0005217977,0.00002800461,0.0005691377],"domain_scores_gemma":[0.9989804,0.0001571407,0.0001518319,0.0005360109,0.0001515466,0.00002309378],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007695449,0.0003110138,0.003402799,0.0000782264,0.0004698432,0.000002671532,0.0002524898,0.00002047115,0.9857094,0.004428312,0.004354309,0.0002009627],"study_design_scores_gemma":[0.001471254,0.000492022,0.00470058,0.00004964534,0.00006909572,0.0001182777,0.0001384435,0.000001125714,0.8369306,0.0001334032,0.1556982,0.0001973161],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9775411,0.0007702567,0.001288785,0.002806476,0.0008052791,0.0006630637,0.0001681646,0.0001259288,0.01583094],"genre_scores_gemma":[0.9955851,0.00007322984,0.0001472856,0.0002617677,0.00002647972,0.00006383286,0.0002695154,0.000022719,0.003550049],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1513439,"threshold_uncertainty_score":0.9650636,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006852519502062556,"score_gpt":0.2359935284867029,"score_spread":0.2291410089846403,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}