{"id":"W4409527251","doi":"10.1128/mbio.00855-25","title":"Lysine polyphosphate modifications contribute to virulence factors in <i>Pseudomonas aeruginosa</i>","year":2025,"lang":"en","type":"article","venue":"mBio","topic":"Coagulation, Bradykinin, Polyphosphates, and Angioedema","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Canada","keywords":"Virulence; Polyphosphate; Biofilm; Pseudomonas aeruginosa; Biology; Microbiology; Lysine; Bacteria; Pathogen; Biochemistry; Genetics; Amino acid; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001162334,0.000372182,0.000165159,0.0001464553,0.0001290905,0.0002772831,0.0001339669,0.0002841894,0.0007010835],"category_scores_gemma":[0.0001566514,0.0001241922,0.0002071467,0.00008970457,0.0002270955,0.0001674331,0.0002875455,0.0004244962,0.0002366585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002088347,"about_ca_system_score_gemma":0.0001387659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006183697,"about_ca_topic_score_gemma":0.0004552966,"domain_scores_codex":[0.9998567,0.00002379615,0.00001194944,0.00002672611,0.00004234499,0.00003847577],"domain_scores_gemma":[0.9998088,0.00002445106,0.00008695298,0.00001493572,0.00002069042,0.00004399899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003872922,0.00000967934,0.0004936967,0.00001094103,0.000001933136,0.0000428982,0.000004792201,0.00001267406,0.9990641,0.00001578334,0.000010263,0.0002944536],"study_design_scores_gemma":[0.000005315823,0.0002436892,0.04231406,0.000004581329,0.00001759255,0.0007345339,0.00005971485,0.000882961,0.9546977,0.00008065623,0.0009522089,0.000006824766],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975205,0.0005160986,0.001157964,0.0001047071,0.000009269203,0.00001087973,0.0001162489,0.00003943134,0.0005248515],"genre_scores_gemma":[0.9986558,0.0001203908,0.0005237758,0.00003292233,0.00000455297,0.000006574227,0.0001422092,0.000008740982,0.0005051249],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007010835,"threshold_uncertainty_score":0.002345324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01577263678431892,"score_gpt":0.2856487342703393,"score_spread":0.2698760974860204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}