{"id":"W4409577550","doi":"10.1016/j.ympev.2025.108357","title":"Phylogenomics and population genomics of Nothobranchius in lowland Tanzania: species delimitation and comparative genetic structure","year":2025,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Fish biology, ecology, and behavior","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver Island University","funders":"Grantová Agentura České Republiky; Ministerstvo Školství, Mládeže a Tělovýchovy","keywords":"Biology; Phylogenomics; Tanzania; Population genomics; Genomics; Evolutionary biology; Population; Comparative genomics; Zoology; Ecology; Phylogenetics; Genome; Clade; Genetics; Gene; Environmental planning; Demography; Geography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001746898,0.0001447355,0.0001477088,0.0008461794,0.0002799808,0.0002192496,0.000119566,0.0001607782,0.0008834877],"category_scores_gemma":[0.0003970435,0.00008458747,0.0001684156,0.0005345871,0.0002181915,0.0001327662,0.0003128114,0.0001535911,0.00009567366],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002069986,"about_ca_system_score_gemma":0.0001839115,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005232223,"about_ca_topic_score_gemma":0.01507272,"domain_scores_codex":[0.9998958,0.00001971068,0.000007599666,0.00004231023,0.000009115356,0.00002548446],"domain_scores_gemma":[0.9997839,0.00004059415,0.00009334432,0.0000152207,0.00002859935,0.00003839021],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002206185,0.00003745655,0.8698883,0.000141216,0.0001073556,0.0002783135,0.003297701,0.0005203643,0.1096946,0.0002742598,0.0002747976,0.01526505],"study_design_scores_gemma":[0.00000290583,0.00002203358,0.9986462,0.00001100358,0.000013331,0.00008175413,0.0004490859,0.0002820758,0.0002115927,0.00003145152,0.0002458419,0.000002747755],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996331,0.00008808522,0.00007138251,0.00001037615,8.068921e-7,0.000001767444,0.0001022605,0.000001549906,0.00009066571],"genre_scores_gemma":[0.9992624,0.0000640152,0.0002031493,0.00001344846,0.000001102282,0.000004716965,0.0003475005,0.000001956962,0.0001016779],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005232223,"threshold_uncertainty_score":0.01040351,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01005763524729377,"score_gpt":0.2196150339964826,"score_spread":0.2095573987491888,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}