{"id":"W4409577550","doi":"10.1016/j.ympev.2025.108357","title":"Phylogenomics and population genomics of Nothobranchius in lowland Tanzania: species delimitation and comparative genetic structure","year":2025,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Fish biology, ecology, and behavior","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver Island University","funders":"Grantová Agentura České Republiky; Ministerstvo Školství, Mládeže a Tělovýchovy","keywords":"Biology; Phylogenomics; Tanzania; Population genomics; Genomics; Evolutionary biology; Population; Comparative genomics; Zoology; Ecology; Phylogenetics; Genome; Clade; Genetics; Gene; Environmental planning; Demography; Geography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005694795,0.0001153514,0.0001755887,0.00007138201,0.00006519596,0.00001242232,0.00004589531,0.0001241834,0.000006462626],"category_scores_gemma":[0.00001085865,0.0001175069,0.0000150279,0.0001165781,0.0002440429,0.00002221436,0.00008566176,0.00006814828,3.995312e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007468466,"about_ca_system_score_gemma":0.000008327156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001459012,"about_ca_topic_score_gemma":0.00140173,"domain_scores_codex":[0.9992926,0.00005839605,0.0002085925,0.0002535899,0.0000521173,0.0001347268],"domain_scores_gemma":[0.9997739,0.00002057645,0.00007294789,0.00008992603,0.00001183093,0.00003078467],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001692605,0.00001686614,0.580717,0.00001111706,0.000005519131,8.395825e-7,0.0000963826,0.001383468,0.4164605,0.0002517275,0.000005198663,0.001034405],"study_design_scores_gemma":[0.0004282382,0.0001008432,0.9882892,0.000006761758,0.0000336518,0.000005652629,0.00008009885,0.004040342,0.003796535,0.003062103,0.00005093297,0.000105682],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968771,0.001418731,0.001213455,0.00004997646,0.00006692706,0.0002366796,0.00002213082,0.000003448567,0.0001114957],"genre_scores_gemma":[0.9967089,0.0002632538,0.0029283,0.0000514529,0.000007952458,0.000004735917,0.00001797937,0.00000436756,0.00001308963],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.412664,"threshold_uncertainty_score":0.4791792,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01005763524729377,"score_gpt":0.2196150339964826,"score_spread":0.2095573987491888,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}