{"id":"W4409593871","doi":"10.1101/2025.04.16.649068","title":"The <i>Salmonella</i> phage shock protein system is required for defense against host antimicrobial peptides","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McMaster University","funders":"McMaster University","keywords":"Salmonella; Antimicrobial peptides; Antimicrobial; Host (biology); Microbiology; Biology; Bacteria; Virology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000795184,0.0002951557,0.0002283361,0.000199361,0.0001354551,0.0003147229,0.00009969228,0.0001609077,0.000954117],"category_scores_gemma":[0.00009230337,0.000114142,0.0003400511,0.0001615033,0.0001790894,0.0001192067,0.0001870005,0.0003079606,0.0004902934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002275713,"about_ca_system_score_gemma":0.0002423555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006517793,"about_ca_topic_score_gemma":0.0006493714,"domain_scores_codex":[0.999892,0.00001260194,0.000007222278,0.00003671198,0.00002629982,0.00002512001],"domain_scores_gemma":[0.999871,0.00001337608,0.0000438163,0.00001071571,0.00002558518,0.00003540807],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002651596,0.000002283817,0.0004804224,0.00001717507,0.000001981804,0.00002581504,0.000004283849,0.00001988856,0.9990239,0.00002042338,0.00003422567,0.0003430691],"study_design_scores_gemma":[0.00001001362,0.00038647,0.1214525,0.00002159005,0.00003139703,0.0007910769,0.0001309306,0.001563721,0.8703844,0.0001715639,0.005040293,0.00001607522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902423,0.001402366,0.005350888,0.0001230522,0.00004370918,0.00001456302,0.001633561,0.0001957802,0.0009938387],"genre_scores_gemma":[0.9902657,0.0004523299,0.003565002,0.000100129,0.00001831583,0.00002105562,0.003349052,0.00003254704,0.00219597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000954117,"threshold_uncertainty_score":0.003191829,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01030352323892678,"score_gpt":0.2133096748053997,"score_spread":0.2030061515664729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}