{"id":"W4409624560","doi":"10.1158/1538-7445.am2025-1117","title":"Abstract 1117: cBioPortal for cancer genomics","year":2025,"lang":"en","type":"article","venue":"Cancer Research","topic":"Advanced Biosensing Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre","funders":"","keywords":"Cancer; Genomics; Medicine; Biology; Genetics; Internal medicine; Genome; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002526114,0.002011253,0.002296006,0.008388886,0.001196043,0.004742851,0.005170993,0.002239578,0.1279839],"category_scores_gemma":[0.009196492,0.001309634,0.001649123,0.01135223,0.0004463032,0.003039573,0.005340234,0.003409341,0.136344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001876712,"about_ca_system_score_gemma":0.003340739,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008448535,"about_ca_topic_score_gemma":0.008965197,"domain_scores_codex":[0.9981807,0.00032625,0.0002124314,0.0003934335,0.0006472101,0.0002400036],"domain_scores_gemma":[0.9962689,0.0009007587,0.0002575587,0.001107343,0.0008608656,0.0006044643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001014418,0.00001063507,0.0003372238,0.0008578848,0.00005339387,0.00006280628,0.00005515743,0.0005172074,0.0007359509,0.003219316,0.9801607,0.01388831],"study_design_scores_gemma":[0.0001633617,0.00001415872,0.001156169,0.0003361031,0.00006163611,0.0001852416,0.00003378517,0.00237936,0.001542905,0.01179915,0.9822726,0.0000554703],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.0007317632,0.00222182,0.01894888,0.001273506,0.0004747554,0.0002174798,0.8612109,0.0962586,0.01866219],"genre_scores_gemma":[0.00315222,0.0007718476,0.01335414,0.0005743022,0.0001005327,0.0004563241,0.96325,0.01477996,0.003560591],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.1279839,"threshold_uncertainty_score":0.4281489,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06044568255684692,"score_gpt":0.4697242197435325,"score_spread":0.4092785371866856,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}