{"id":"W4409804832","doi":"10.1038/s41598-025-98321-4","title":"Gene expression analyses on Dickeya solani strains of diverse virulence levels unveil important pathogenicity factors for this species","year":2025,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Université de Lyon; Ministerstwo Edukacji i Nauki; Narodowe Centrum Nauki","keywords":"Virulence; Pathogenicity; Biology; Microbiology; Gene; Pathogenicity island; Virulence factor; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008080572,0.000221231,0.0003810322,0.00005857209,0.000623591,0.0001086155,0.0002805743,0.00009642221,0.0002634294],"category_scores_gemma":[0.000492652,0.00008647201,0.0002711141,0.0005160864,0.0003600285,0.0001372349,0.0001911994,0.00007754271,0.00000252993],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004111462,"about_ca_system_score_gemma":0.00005104494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005892883,"about_ca_topic_score_gemma":0.000213092,"domain_scores_codex":[0.9976763,0.00006028784,0.0006698119,0.000796987,0.0004402835,0.0003563004],"domain_scores_gemma":[0.9987085,0.0002310696,0.0005299177,0.0002552943,0.0001908319,0.0000844211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001741132,0.0001002458,0.0290945,0.00001492239,0.00003174723,0.00003141807,0.0001587052,0.000003187039,0.9668816,0.00003239428,0.002867606,0.0007662718],"study_design_scores_gemma":[0.00005801687,0.00007192372,0.2282653,0.00006332036,0.00003957869,0.000005565299,0.000534355,0.000008164489,0.7663584,0.0006929216,0.003748066,0.0001543575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956721,0.0001214096,0.00003333205,0.00007717079,0.002166655,0.0004052015,0.001058395,0.00005262714,0.0004131069],"genre_scores_gemma":[0.99709,0.00002357774,0.0002393302,0.00002549912,0.0000555131,0.00001891891,0.0002570258,0.000001088858,0.002288992],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2005231,"threshold_uncertainty_score":0.479622,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09358165589954168,"score_gpt":0.2916593932487368,"score_spread":0.1980777373491951,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}