{"id":"W4409855473","doi":"10.1186/s12915-025-02196-w","title":"Transcriptomic characterization of transitioning cell types in the skin of Atlantic salmon","year":2025,"lang":"en","type":"article","venue":"BMC Biology","topic":"Mesenchymal stem cell research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Prince Edward Island","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada; Xunta de Galicia; Axencia Galega de Innovación; Mitsubishi Electric Research Laboratories","keywords":"Biology; Transcriptome; Computational biology; Evolutionary biology; Cell biology; Fishery; Zoology; Gene; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003058618,0.00004652671,0.0001836233,0.0001344468,0.00001113906,0.000001332122,0.00007825353,0.00007953874,0.000068833],"category_scores_gemma":[0.00002958483,0.00003115953,0.00004151124,0.0002450782,0.0000691024,0.00001089723,0.000005719723,0.00009014718,0.000003506997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001125835,"about_ca_system_score_gemma":0.00007719036,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001489307,"about_ca_topic_score_gemma":0.00007170762,"domain_scores_codex":[0.9993564,0.0001688178,0.0002145099,0.00009731338,0.00005828248,0.0001046354],"domain_scores_gemma":[0.9996749,0.0001215443,0.00003860856,0.0001186416,0.0000357549,0.00001056595],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001700393,0.00007712928,0.1045793,0.0003811627,0.000007100215,0.000001103566,0.0004238358,0.000001464431,0.8927469,0.0009420739,0.000006116006,0.000663737],"study_design_scores_gemma":[0.001116939,0.0002702563,0.7504936,0.0001567168,0.00003667938,0.000004822514,0.0001893551,0.0005289381,0.2464204,0.000125152,0.0006145778,0.00004257512],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941857,0.0001535206,0.001764701,0.0003180087,0.0000431059,0.0002774801,0.000004379904,0.000004006873,0.003249103],"genre_scores_gemma":[0.9995282,0.00006218936,0.0001022757,0.00005963676,0.00001524558,0.000008550292,0.00006267791,0.000003060032,0.0001581672],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6463266,"threshold_uncertainty_score":0.1270649,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02313635476351315,"score_gpt":0.3041635379463842,"score_spread":0.281027183182871,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}