{"id":"W4409963130","doi":"10.1128/msystems.00371-25","title":"Longitudinal surveillance of the molecular evolution of methicillin-resistant <i>Staphylococcus aureus</i> isolates from pediatric patients in Shanghai, China, from 2013 to 2022","year":2025,"lang":"en","type":"article","venue":"mSystems","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Clindamycin; Virulence; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Biology; Antibiotic resistance; Molecular epidemiology; clone (Java method); Erythromycin; Microbiology; Medicine; Antibiotics; Genetics; Gene; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004518556,0.0003751091,0.0002039793,0.001046999,0.0002790502,0.0003864917,0.0002648134,0.0002002048,0.0004750437],"category_scores_gemma":[0.0006316171,0.0002010517,0.0002777162,0.001183941,0.0002083256,0.0002165498,0.0003436182,0.000187304,0.00009565624],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008262997,"about_ca_system_score_gemma":0.001153311,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05747207,"about_ca_topic_score_gemma":0.06134012,"domain_scores_codex":[0.9997384,0.00003882675,0.00002937546,0.00006587429,0.00006336084,0.00006421137],"domain_scores_gemma":[0.9991067,0.00005273725,0.0003295437,0.0000493365,0.0002816652,0.000179973],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002346337,0.000003640323,0.9980568,0.0000101349,0.00001705914,0.00006349608,0.00008361397,0.00005686392,0.0006498717,0.000007013742,0.00009616661,0.0009318116],"study_design_scores_gemma":[0.000001155722,0.00002488138,0.9994469,0.000002926294,0.00001063495,0.00006426897,0.0001322728,0.0001198049,0.00008928651,0.000001810159,0.0001047951,0.000001207173],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989503,0.0001161695,0.00006419147,0.00001966528,0.000002280463,0.000003932515,0.00073136,0.000004302194,0.0001077801],"genre_scores_gemma":[0.998582,0.0001020852,0.00008584309,0.00001909236,0.000004129016,0.000005657464,0.001111364,0.000001015293,0.00008879267],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05747207,"threshold_uncertainty_score":0.114275,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006926843083329512,"score_gpt":0.2410859536796172,"score_spread":0.2341591105962877,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}