{"id":"W4409996787","doi":"10.1186/s12866-025-03990-w","title":"Identification of genetic determinants of antibiotic resistance in Helicobacter pylori isolates in Vietnam by high-throughput sequencing","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Science and Technology Research Partnership for Sustainable Development; Institute of Genetics; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; National Institute of Diabetes and Digestive and Kidney Diseases; Japan International Cooperation Agency; National Institutes of Health; Japan Agency for Medical Research and Development","keywords":"Biology; Helicobacter pylori; Antibiotic resistance; Identification (biology); Parasitology; DNA sequencing; Antibiotics; Microbiology; Genetics; Computational biology; Gene; Zoology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007679833,0.0002303507,0.0004047399,0.0009093913,0.0003657199,0.0005784014,0.0002741597,0.0002866045,0.0006139954],"category_scores_gemma":[0.001190835,0.0002371618,0.0005147471,0.001058011,0.00016071,0.0001968174,0.0003359756,0.0002611291,0.000169355],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004446912,"about_ca_system_score_gemma":0.000672324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008813745,"about_ca_topic_score_gemma":0.01422937,"domain_scores_codex":[0.9994627,0.0001116453,0.00006314794,0.0001430373,0.0001403689,0.00007918336],"domain_scores_gemma":[0.9992189,0.0001917398,0.0002136241,0.00005790965,0.0002232947,0.00009451107],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004742768,0.0002176445,0.7800013,0.000608028,0.0005303742,0.001804731,0.002718406,0.001807568,0.1618971,0.0003159734,0.001255151,0.04836948],"study_design_scores_gemma":[0.00003967598,0.000283996,0.9684759,0.0001273818,0.0003896029,0.001828206,0.00227031,0.007242813,0.01048936,0.0002181143,0.008596125,0.00003846534],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941129,0.001022301,0.002150739,0.0001154666,0.00001365889,0.00004080675,0.001894528,0.00001937619,0.0006302811],"genre_scores_gemma":[0.9885827,0.0007935446,0.004999819,0.000143362,0.00001461547,0.00005981447,0.004608523,0.00002238179,0.0007752317],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008813745,"threshold_uncertainty_score":0.0175249,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01188788198546361,"score_gpt":0.2632774006349987,"score_spread":0.2513895186495351,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}