{"id":"W4410008767","doi":"10.3390/genes16050536","title":"Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping","year":2025,"lang":"en","type":"article","venue":"Genes","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Terry Fox Research Institute","funders":"Kementerian Sumber Asli dan Alam Sekitar; Vietnam Academy of Science and Technology","keywords":"Vietnamese; Genome; Reference genome; Sequence assembly; Biology; Population; Computational biology; Genetics; Human genome; Genomics; DNA sequencing; Whole genome sequencing; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001513911,0.0009791795,0.0007610992,0.001370197,0.000794474,0.00128798,0.0008995368,0.0008549954,0.001513523],"category_scores_gemma":[0.00235736,0.000553026,0.0009516579,0.00145549,0.0003531018,0.0007826262,0.0009964425,0.001295909,0.001442285],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000952321,"about_ca_system_score_gemma":0.001573024,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006494639,"about_ca_topic_score_gemma":0.01118939,"domain_scores_codex":[0.9992948,0.0001053358,0.00006051452,0.0003068536,0.0001590805,0.00007347278],"domain_scores_gemma":[0.9989921,0.0001803449,0.0001569882,0.0001568407,0.0004352468,0.00007844154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000316419,0.0001344646,0.01339649,0.001011746,0.0001635571,0.001171479,0.001193947,0.007702549,0.8835832,0.004208779,0.003111053,0.08400637],"study_design_scores_gemma":[0.0001206064,0.0006158889,0.05654716,0.0004842159,0.0005626153,0.002148255,0.001310005,0.09612902,0.6639578,0.005832779,0.1720668,0.0002248751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2950776,0.003374353,0.6788324,0.0008316826,0.0004381425,0.0006225523,0.01061945,0.004218625,0.0059852],"genre_scores_gemma":[0.2043528,0.00175964,0.7565757,0.0003073051,0.00005874251,0.000332888,0.03089869,0.001380842,0.004333345],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.006494639,"threshold_uncertainty_score":0.0129137,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04466140182369679,"score_gpt":0.2781416911664654,"score_spread":0.2334802893427686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}