{"id":"W4410008767","doi":"10.3390/genes16050536","title":"Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping","year":2025,"lang":"en","type":"article","venue":"Genes","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Terry Fox Research Institute","funders":"Kementerian Sumber Asli dan Alam Sekitar; Vietnam Academy of Science and Technology","keywords":"Vietnamese; Genome; Reference genome; Sequence assembly; Biology; Population; Computational biology; Genetics; Human genome; Genomics; DNA sequencing; Whole genome sequencing; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002205646,0.0002097879,0.000237594,0.00007434346,0.0001919036,0.00006498393,0.0001656068,0.0001519257,0.000005043788],"category_scores_gemma":[0.0000702138,0.0002152048,0.00006005352,0.0001206865,0.0001441251,0.000001728709,0.0003714821,0.0000976567,0.000001456742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006320744,"about_ca_system_score_gemma":0.0002704476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004320596,"about_ca_topic_score_gemma":0.00003447711,"domain_scores_codex":[0.9987645,0.00004391703,0.0002561492,0.000454079,0.00007693539,0.0004043868],"domain_scores_gemma":[0.9994687,0.00002099121,0.0000738407,0.000248217,0.0001022595,0.00008594457],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001701462,0.000007735332,0.009859281,0.00007379174,0.0001232275,0.00001464665,0.00024445,0.0002320179,0.9853367,0.0002298578,0.000001717113,0.003859621],"study_design_scores_gemma":[0.003939919,0.0005781841,0.1646374,0.0004345189,0.0006034131,0.002323249,0.01474663,0.001933479,0.7752649,0.002061141,0.03042991,0.003047174],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9768521,0.01084198,0.01058841,0.00008737163,0.0001171044,0.0001604605,0.00001713211,0.000008357867,0.001327047],"genre_scores_gemma":[0.9778569,0.0009331561,0.02068605,0.0002045156,0.0001663709,0.00001423779,0.00001359371,0.00001781429,0.0001072993],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2100717,"threshold_uncertainty_score":0.8775796,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04466140182369679,"score_gpt":0.2781416911664654,"score_spread":0.2334802893427686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}