{"id":"W4410023467","doi":"10.1139/gen-2023-0099","title":"Pangenomic analysis of three putative hydrocarbon degrading genera <i>Limnohabitans, Aquabacterium</i>, and <i>Novosphingobium</i> collected from freshwater sources","year":2025,"lang":"en","type":"article","venue":"Genome","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; International Institute for Sustainable Development; McGill University","funders":"","keywords":"Biology; Genus; Ecological niche; Niche; Metagenomics; Zoology; Ecology; Gene; Genetics; Habitat","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001971309,0.0004941094,0.0004142987,0.001608669,0.0005724274,0.0005695908,0.000171071,0.000236552,0.0008691864],"category_scores_gemma":[0.0004187612,0.0001658435,0.0005094194,0.001906488,0.0001770221,0.0004448879,0.0007756493,0.0003195848,0.0002108221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002337919,"about_ca_system_score_gemma":0.0004799659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003034885,"about_ca_topic_score_gemma":0.005718622,"domain_scores_codex":[0.9998325,0.00001260639,0.00001524528,0.00006671462,0.0000355601,0.00003736264],"domain_scores_gemma":[0.9997314,0.00003734255,0.00007793685,0.00001936165,0.0000673322,0.00006664474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003758857,0.00004644,0.04093719,0.0003709162,0.00008929265,0.0001450284,0.0004412006,0.0001766965,0.9437772,0.0001087572,0.0002005455,0.01333082],"study_design_scores_gemma":[0.00002559818,0.00054576,0.8983808,0.00008406241,0.0004180839,0.001308141,0.001635422,0.001516946,0.08350647,0.0002408795,0.01229351,0.00004438527],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850403,0.001074574,0.001955083,0.00007171242,0.00001570346,0.00005111047,0.01060898,0.00006596768,0.001116514],"genre_scores_gemma":[0.9494671,0.001325295,0.01120658,0.0001541909,0.00001813701,0.0001048741,0.03638722,0.0000606332,0.001275902],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003034885,"threshold_uncertainty_score":0.006034434,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007204899539854991,"score_gpt":0.2071806962102999,"score_spread":0.1999757966704449,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}