{"id":"W4410027171","doi":"10.1371/journal.pone.0309585","title":"Identification of stable reference genes in Edwardsiella ictaluri for accurate gene expression analysis","year":2025,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Reference genes; Housekeeping gene; Gene; Genetics; rpoS; Edwardsiella ictaluri; Computational biology; Gene expression; Catfish; Promoter","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002332116,0.001354657,0.001680821,0.001835694,0.0006375815,0.001521987,0.0007237718,0.0008858037,0.0008265837],"category_scores_gemma":[0.003444827,0.0004507379,0.0009085403,0.002177676,0.0007529789,0.0007505621,0.0009847273,0.0009674343,0.0008053892],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008187336,"about_ca_system_score_gemma":0.0009131691,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002461413,"about_ca_topic_score_gemma":0.003996516,"domain_scores_codex":[0.9971749,0.000346233,0.0003424181,0.0008620467,0.001007871,0.0002664184],"domain_scores_gemma":[0.9984617,0.0003261091,0.0002931,0.0001368541,0.00073229,0.00005005692],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002114094,0.00007719157,0.003325293,0.0002960506,0.00001889672,0.0000860114,0.0002985977,0.0003597552,0.984641,0.000201873,0.0001961061,0.01028796],"study_design_scores_gemma":[0.00002306567,0.0007555729,0.03340848,0.0001510454,0.0001631724,0.0003097643,0.0004999624,0.00551395,0.947218,0.0003973351,0.01149221,0.00006752812],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8493501,0.008483768,0.1249875,0.0004424381,0.0003794807,0.0006962873,0.01001945,0.001266045,0.004374879],"genre_scores_gemma":[0.6583782,0.006546054,0.2963591,0.0005304291,0.0001085047,0.003186723,0.02623073,0.0008517912,0.00780847],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002461413,"threshold_uncertainty_score":0.01233357,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03676395420989809,"score_gpt":0.2949281506464833,"score_spread":0.2581641964365852,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}