{"id":"W4410142519","doi":"10.1093/ismeco/ycaf055","title":"<i>Vibrio</i> are a potential source of novel colistin-resistance genes in European coastal environments","year":2025,"lang":"en","type":"article","venue":"ISME Communications","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Région Occitanie Pyrénées-Méditerranée; Université de Montréal; European Commission; Centre National de la Recherche Scientifique; Université de Perpignan Via Domitia; Agence Nationale de la Recherche; Joint Programming Initiative Water challenges for a changing world; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Biology; Vibrio; Vibrio Infections; Vibrio parahaemolyticus; Mobile genetic elements; Vibrio harveyi; Colistin; Microbiology; Genetics; Gene; Genome; Bacteria; Antibiotics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001449741,0.0001075981,0.0001376524,0.00004634225,0.0000924553,0.00001594359,0.000786162,0.00006119906,0.00000481828],"category_scores_gemma":[0.00004795293,0.0001236967,0.0000578933,0.0001160086,0.0003063556,0.000004024656,0.0006161631,0.0000892642,0.000004285478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001446796,"about_ca_system_score_gemma":0.00004378284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002979163,"about_ca_topic_score_gemma":0.0006852765,"domain_scores_codex":[0.9991481,0.0001328464,0.0003034965,0.0001980271,0.00007654704,0.0001410078],"domain_scores_gemma":[0.998455,0.00002151054,0.000163453,0.001300996,0.00003186424,0.00002714225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005821202,0.0003684283,0.02714714,0.00002956622,0.00004006037,0.000001008775,0.00005063838,0.0002148923,0.9701869,0.000353555,0.0008559397,0.0006936453],"study_design_scores_gemma":[0.001805904,0.00004951957,0.471079,0.0003011144,0.00005035011,0.000004522977,0.0005966894,0.0002605657,0.04661426,0.00005453738,0.4788219,0.0003616746],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9611275,0.002507817,0.02582277,0.0004992685,0.00008007597,0.0002836721,0.0001300893,0.0000115081,0.009537271],"genre_scores_gemma":[0.989265,0.0007925957,0.005495538,0.0001229751,0.00001982077,0.00001074265,0.0001456285,0.00001624938,0.004131495],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9235727,"threshold_uncertainty_score":0.5044206,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01509902057086892,"score_gpt":0.2586190671557557,"score_spread":0.2435200465848867,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}