{"id":"W4410153702","doi":"10.1371/journal.pbio.3003157","title":"A standardized nomenclature for the rods and cones of the vertebrate retina","year":2025,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"H2020 European Research Council; Biotechnology and Biological Sciences Research Council; National Eye Institute; Wellcome Trust; Lister Institute of Preventive Medicine; Leverhulme Trust; UK Research and Innovation; McKnight Foundation","keywords":"Biology; Vertebrate; Opsin; Nomenclature; Rhodopsin; Evolutionary biology; Retina; Gene; Genetics; Neuroscience; Taxonomy (biology); Retinal; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003585587,0.001869737,0.001236754,0.005759574,0.003181698,0.004190293,0.003161654,0.001843656,0.01352714],"category_scores_gemma":[0.00476485,0.0003707715,0.001441795,0.005548194,0.004836253,0.004539194,0.003270542,0.004297771,0.0131767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001510008,"about_ca_system_score_gemma":0.00395257,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001924004,"about_ca_topic_score_gemma":0.002860346,"domain_scores_codex":[0.9953661,0.001301406,0.001141624,0.0007680677,0.001139661,0.0002830875],"domain_scores_gemma":[0.9969001,0.0005226643,0.0005696175,0.0005370909,0.001190832,0.0002798531],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0002678786,0.00007967552,0.002490174,0.002018376,0.00006244423,0.0007038482,0.003297655,0.0005743182,0.03083408,0.5008692,0.1893051,0.2694973],"study_design_scores_gemma":[0.00000729753,0.00009156143,0.001749779,0.0004064446,0.00002925118,0.00163019,0.0004822881,0.0003051308,0.001586415,0.03197617,0.9616849,0.00005055336],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02002214,0.07301653,0.5604965,0.01223558,0.03347665,0.001524662,0.01158746,0.004025244,0.2836152],"genre_scores_gemma":[0.08795673,0.05140354,0.7595593,0.009955313,0.008004111,0.002625132,0.021271,0.002439473,0.05678536],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01352714,"threshold_uncertainty_score":0.04525286,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006111955865747709,"score_gpt":0.2491778418792476,"score_spread":0.2430658860134999,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}