{"id":"W4410163265","doi":"10.1099/ijsem.0.006757","title":"Phylogenomic studies and molecular markers clarifying the evolutionary relationships and classification of Pseudalkalibacillus species: proposal for the family Guptibacillaceae fam. nov. harbouring the genera Guptibacillus gen. nov. and Exobacillus gen. nov.","year":2025,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Clade; Polyphyly; Type genus; Evolutionary biology; Genus; Taxon; Taxonomy (biology); Zoology; Phylogenetics; Type species; Botany; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000243574,0.0002909051,0.0001862895,0.001146302,0.0002428533,0.0003352367,0.0001479485,0.0002601644,0.0003260691],"category_scores_gemma":[0.0003521405,0.0001079875,0.0003456123,0.0009345222,0.0001545584,0.0003287513,0.0003075832,0.0002417981,0.0001944943],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001236985,"about_ca_system_score_gemma":0.0002277376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009102235,"about_ca_topic_score_gemma":0.0009511074,"domain_scores_codex":[0.9998133,0.00002617462,0.00002134999,0.00006379743,0.00003220443,0.00004329011],"domain_scores_gemma":[0.9998438,0.00002586213,0.00004993517,0.00001591343,0.00003491833,0.00002955307],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002354093,0.00006242024,0.06656205,0.0001099017,0.00003362659,0.0002294767,0.0003063015,0.0003078596,0.9128096,0.0002324818,0.000068662,0.01904225],"study_design_scores_gemma":[0.00001755692,0.0004525061,0.8424551,0.00006953665,0.0002387824,0.001981623,0.001337004,0.009376028,0.1366973,0.0005109769,0.006831351,0.00003227611],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946541,0.0009763978,0.003019772,0.00005671248,0.000007303612,0.00002099189,0.000565086,0.00002321231,0.0006762901],"genre_scores_gemma":[0.9913124,0.0006398867,0.00534933,0.00004285762,0.000007948401,0.00002813535,0.002204132,0.000008808958,0.0004064919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001146302,"threshold_uncertainty_score":0.001809835,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0330595225749559,"score_gpt":0.2665313390607737,"score_spread":0.2334718164858178,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}