{"id":"W4410163265","doi":"10.1099/ijsem.0.006757","title":"Phylogenomic studies and molecular markers clarifying the evolutionary relationships and classification of Pseudalkalibacillus species: proposal for the family Guptibacillaceae fam. nov. harbouring the genera Guptibacillus gen. nov. and Exobacillus gen. nov.","year":2025,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Clade; Polyphyly; Type genus; Evolutionary biology; Genus; Taxon; Taxonomy (biology); Zoology; Phylogenetics; Type species; Botany; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001210043,0.0002513029,0.0004397262,0.0001310841,0.0005340596,0.00005062794,0.0003674447,0.0001668246,0.000001215409],"category_scores_gemma":[0.0003941293,0.0001447839,0.000125774,0.00008859972,0.0009430177,0.0000111761,0.000358007,0.0002090517,4.302568e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008279843,"about_ca_system_score_gemma":0.0001893944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001293649,"about_ca_topic_score_gemma":0.000019826,"domain_scores_codex":[0.9981536,0.0003196758,0.0008676937,0.0003161848,0.0001316852,0.000211194],"domain_scores_gemma":[0.9978094,0.0005548584,0.0006317251,0.0002474193,0.000714893,0.00004172041],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003874795,0.00004518752,0.007569588,0.001472251,0.003709894,0.000003746235,0.001015263,0.0006094589,0.9733875,0.009693921,0.001839308,0.0002664422],"study_design_scores_gemma":[0.01005379,0.002238691,0.8338075,0.004088255,0.005429715,0.00953158,0.07180684,0.00865787,0.006329877,0.02221334,0.0238862,0.001956345],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8113234,0.1766136,0.004518645,0.005874648,0.0005681447,0.0008941641,0.0001424989,0.000002636008,0.00006227961],"genre_scores_gemma":[0.988223,0.008927982,0.00210026,0.0002728002,0.0001816263,0.00005788547,0.00001692526,0.00001414273,0.0002053634],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9670576,"threshold_uncertainty_score":0.5904115,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0330595225749559,"score_gpt":0.2665313390607737,"score_spread":0.2334718164858178,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}