{"id":"W4410231660","doi":"10.1261/rna.080359.124","title":"Alu RNA pseudoknot alterations influence SRP9/SRP14 association","year":2025,"lang":"en","type":"article","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; University of Manitoba","funders":"","keywords":"Pseudoknot; Biology; Alu element; RNA; Genetics; Signal recognition particle RNA; Non-coding RNA; RNA silencing; Human genome; Computational biology; Genome; Gene; RNA interference","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000208031,0.00009683183,0.00009217581,0.00003732492,0.0001215996,0.0000455502,0.0001496715,0.0001502058,0.00004757119],"category_scores_gemma":[0.0002733045,0.00009785734,0.00006407394,0.00009506176,0.000012411,0.00000535875,0.00005405658,0.00005920523,0.00006717681],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003362651,"about_ca_system_score_gemma":0.00007494946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002584704,"about_ca_topic_score_gemma":0.0000181548,"domain_scores_codex":[0.9992773,0.00006587791,0.0001586914,0.0002177464,0.0001084416,0.0001719721],"domain_scores_gemma":[0.9995177,0.00001893538,0.00007558515,0.0002587207,0.00009270481,0.00003637007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001136439,0.0000203725,0.0006028218,0.00000803059,0.00004037317,6.331673e-7,0.00001780368,0.00005817819,0.9874343,0.001171126,0.005027621,0.005607418],"study_design_scores_gemma":[0.0001433478,0.00004393643,0.001471018,0.0000222574,0.00001896164,7.801624e-7,0.00001087339,0.00004093432,0.9457139,0.001235077,0.05118776,0.0001111012],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9669758,0.0004843489,0.01072044,0.001285769,0.0003535585,0.0002297802,0.00001742319,0.00003013321,0.01990277],"genre_scores_gemma":[0.9851816,0.0001179844,0.00110227,0.001042041,0.0001450169,0.00004651214,0.0000312593,0.000009040773,0.0123243],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04616014,"threshold_uncertainty_score":0.3990507,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005781487499922062,"score_gpt":0.2471450152391269,"score_spread":0.2413635277392049,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}