{"id":"W4410231660","doi":"10.1261/rna.080359.124","title":"Alu RNA pseudoknot alterations influence SRP9/SRP14 association","year":2025,"lang":"en","type":"article","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; University of Manitoba","funders":"","keywords":"Pseudoknot; Biology; Alu element; RNA; Genetics; Signal recognition particle RNA; Non-coding RNA; RNA silencing; Human genome; Computational biology; Genome; Gene; RNA interference","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008112484,0.0001541289,0.0001397025,0.0001384866,0.000098369,0.0002279124,0.0001249751,0.0002687817,0.001435507],"category_scores_gemma":[0.0002125768,0.0001042555,0.0001723775,0.00008380706,0.0001536846,0.00009865702,0.000151012,0.0002236632,0.0003638378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001099871,"about_ca_system_score_gemma":0.00007734728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005245378,"about_ca_topic_score_gemma":0.0005826131,"domain_scores_codex":[0.9998935,0.00002009899,0.000007264198,0.00002581936,0.00003133888,0.00002185638],"domain_scores_gemma":[0.9998965,0.00003091434,0.00002677897,0.00001024234,0.00001174166,0.00002365193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008687906,0.000008365421,0.001082654,0.00001297587,0.000004348093,0.00008930021,0.000009524992,0.0000482343,0.9978819,0.00002644265,0.0000201927,0.0007290543],"study_design_scores_gemma":[0.000009129458,0.0001582169,0.03577359,0.000004481631,0.00001310519,0.0006761436,0.00005349795,0.001233922,0.9604549,0.00005272508,0.001565315,0.000005024514],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998368,0.000309841,0.0006485899,0.00002387506,0.000005002795,0.000004687633,0.0001278638,0.00002744519,0.0004846897],"genre_scores_gemma":[0.9985124,0.0001323254,0.0005269827,0.00001845734,0.000001850136,0.000005407938,0.0002303983,0.0000142584,0.0005577998],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001435507,"threshold_uncertainty_score":0.004802287,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005781487499922062,"score_gpt":0.2471450152391269,"score_spread":0.2413635277392049,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}