{"id":"W4410232257","doi":"10.1099/mgen.0.001386","title":"Detection of novel Plasmodium falciparum haplotypes under treatment pressure in paediatric severe malaria","year":2025,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Malaria Research and Control","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Institut Mérieux; Université de Montpellier; Fondation pour la Recherche Médicale; Agence Nationale de la Recherche; Centre National de la Recherche Scientifique; Alliance Française contre les Maladies Parasitaires","keywords":"Plasmodium falciparum; Malaria; Artesunate; Quinine; Parasite hosting; Virology; Biology; Multiplicity of infection; Immunology; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001324079,0.0001434781,0.0003214526,0.0002672014,0.0000413619,0.00001644027,0.00009166266,0.0001624066,0.00004597704],"category_scores_gemma":[0.00003458907,0.0001296026,0.0001071404,0.000255321,0.00003806957,0.00003245573,0.0000561109,0.0001668161,0.00001144773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002541801,"about_ca_system_score_gemma":0.0003926294,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005136953,"about_ca_topic_score_gemma":0.0005066617,"domain_scores_codex":[0.9990723,0.00003651051,0.0002740576,0.00024312,0.00008582378,0.000288217],"domain_scores_gemma":[0.9995242,0.0000487301,0.00005809668,0.0002355355,0.00006682995,0.00006659917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002438155,0.0007086749,0.001609024,0.0001576019,0.0004056621,0.000008721956,0.0001816179,0.002034083,0.9868404,0.00101304,0.0002075014,0.004395578],"study_design_scores_gemma":[0.06352228,0.00274156,0.2307125,0.0002553557,0.001896685,0.0001266656,0.0007037155,0.02085351,0.5940961,0.0005454986,0.08365846,0.0008876662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989203,0.001375579,0.003509338,0.002710027,0.0003223855,0.001211756,0.0001238292,0.00003667152,0.001507396],"genre_scores_gemma":[0.9960628,0.0001270371,0.0004444922,0.0001420298,0.0001042346,0.00002749456,0.00002257603,0.00001567854,0.003053665],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3927443,"threshold_uncertainty_score":0.528504,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01397981852236865,"score_gpt":0.2503412133200925,"score_spread":0.2363613947977238,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}