{"id":"W4410292483","doi":"10.1016/j.jtbi.2025.112142","title":"Pillars of theoretical biology: ‘Mathematical models for cellular interaction in development, I and II’","year":2025,"lang":"en","type":"article","venue":"Journal of Theoretical Biology","topic":"Greenhouse Technology and Climate Control","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Mathematical and theoretical biology; Development (topology); Computational biology; Evolutionary biology; Biological system; Mathematics; Genetics; Mathematical analysis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009172822,0.0001302361,0.0004784803,0.00007528261,0.00007694541,0.000006939925,0.0002626714,0.0003627599,0.0001435269],"category_scores_gemma":[0.0005561213,0.00005085365,0.0001120889,0.0001510458,0.001111541,0.00004678335,0.0001266805,0.0002629563,0.00000111547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002249216,"about_ca_system_score_gemma":0.00001969943,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":9.003349e-7,"about_ca_topic_score_gemma":0.000004862861,"domain_scores_codex":[0.998723,0.000148186,0.0006570517,0.0001725328,0.00004744088,0.0002517567],"domain_scores_gemma":[0.9984201,0.001162555,0.0001978154,0.0000505844,0.0001159922,0.00005300738],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0003332449,0.0001435228,0.001435679,0.00001469421,0.00004144216,0.000001539361,0.00004811719,0.000001378837,0.1130039,0.8683159,0.00001277824,0.01664777],"study_design_scores_gemma":[0.0005363429,0.0008511207,0.0003260122,0.00007696727,0.000036049,0.00001863843,0.0002186781,0.0009400838,0.02629766,0.9699381,0.00067075,0.0000895723],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900366,0.0003446049,0.004852468,0.00349938,0.0001172259,0.0001686375,0.000009887713,0.00001351909,0.0009576564],"genre_scores_gemma":[0.9984677,0.00007891699,0.001227228,0.0001706323,0.00003291921,0.00000889628,0.000005570324,0.000001060215,0.000007079308],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1016222,"threshold_uncertainty_score":0.4095518,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01526210329172502,"score_gpt":0.2596679111444582,"score_spread":0.2444058078527332,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}