{"id":"W4410317678","doi":"10.1021/acs.jproteome.4c00963","title":"ProteoPlotter: An Executable Proteomics Visualization Tool Compatible with Perseus","year":2025,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Executable; Visualization; Proteomics; Computer science; Computational biology; Biology; Data mining; Programming language; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003379093,0.002981856,0.001192057,0.002955016,0.0007695522,0.002431368,0.003355011,0.001162135,0.04087109],"category_scores_gemma":[0.008895159,0.001490249,0.00162226,0.001574045,0.0007616056,0.003563074,0.003523725,0.002354131,0.0183559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007900752,"about_ca_system_score_gemma":0.002060574,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002199666,"about_ca_topic_score_gemma":0.002055945,"domain_scores_codex":[0.9988624,0.0001858118,0.0001413331,0.0002911178,0.0003836582,0.0001357435],"domain_scores_gemma":[0.9970281,0.001703652,0.0003319362,0.000323188,0.0004420381,0.0001711713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003515819,0.0004059971,0.006143961,0.004385296,0.0005030524,0.002597835,0.002221288,0.01113244,0.06452166,0.02640438,0.5745106,0.3036577],"study_design_scores_gemma":[0.00104306,0.0003258778,0.007977514,0.001227565,0.0001957191,0.002067182,0.000420993,0.1296531,0.1504794,0.04927718,0.656635,0.0006973896],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.006482375,0.0004581187,0.319481,0.0003779672,0.0002455028,0.0003149661,0.02473291,0.6426102,0.005296849],"genre_scores_gemma":[0.07146344,0.001265203,0.6409106,0.001474147,0.0002084057,0.002520364,0.07409491,0.1916332,0.01642976],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.04087109,"threshold_uncertainty_score":0.1367274,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04315564992084182,"score_gpt":0.4102176298775911,"score_spread":0.3670619799567493,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}