{"id":"W4410326242","doi":"10.3390/v17050696","title":"Genomic Diversity of Tomato Brown Rugose Fruit Virus in Canadian Greenhouse Production Systems","year":2025,"lang":"en","type":"article","venue":"Viruses","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture, Food and Rural Affairs; Brock University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"ORFS; Biology; GenBank; Genetics; Phylogenetic tree; Gene; Genome; Open reading frame; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002146424,0.000388304,0.0002920893,0.002203397,0.001503173,0.0007293611,0.0004457875,0.0002985482,0.0009044515],"category_scores_gemma":[0.000523252,0.0001764259,0.000348513,0.002447708,0.0004744968,0.0001696804,0.000444391,0.000314446,0.0001322142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006919099,"about_ca_system_score_gemma":0.005815963,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8330508,"about_ca_topic_score_gemma":0.9177039,"domain_scores_codex":[0.9996076,0.00001108242,0.00001082956,0.0001406882,0.0001142627,0.0001155299],"domain_scores_gemma":[0.9995377,0.00003225591,0.00006916413,0.00002202109,0.0002006468,0.0001382678],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007950049,0.0001175406,0.4327785,0.0003105971,0.0001621048,0.001691705,0.007255483,0.0007351507,0.5208738,0.0005460947,0.001509647,0.03322436],"study_design_scores_gemma":[0.000007988888,0.00009053162,0.9892223,0.00002133742,0.00005773769,0.0003550519,0.001518774,0.0002364526,0.003079806,0.00002259079,0.005364234,0.00002317942],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994006,0.0003513617,0.0002539438,0.00003468781,0.000006319536,0.00005079805,0.003291934,0.00001663984,0.001988317],"genre_scores_gemma":[0.9894572,0.0003928058,0.001035919,0.00005962289,0.000003307129,0.00003155619,0.007473092,0.00001375284,0.001532819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1669492,"threshold_uncertainty_score":0.3358648,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04684563898427815,"score_gpt":0.2553936875406239,"score_spread":0.2085480485563457,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}