{"id":"W4410348856","doi":"10.1016/j.jip.2025.108355","title":"Shell bacterial community dynamics suggest that American lobster (Homarus americanus) impoundment shell disease is caused by a dysbiosis","year":2025,"lang":"en","type":"article","venue":"Journal of Invertebrate Pathology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Ocean Frontier Institute; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Homarus; American lobster; Biology; Ecology; Dysbiosis; Shell (structure); Zoology; Fishery; Microbiome; Crustacean; Bioinformatics; Engineering","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000488591,0.0004653147,0.0009186904,0.0003439997,0.0003722673,0.00007901926,0.0008363511,0.0002301398,0.0007789716],"category_scores_gemma":[0.00009713891,0.0003864322,0.0003968127,0.0003767656,0.001034433,0.0002064026,0.0004058238,0.0009470128,0.0002226831],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003128237,"about_ca_system_score_gemma":0.0002055822,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003182387,"about_ca_topic_score_gemma":0.0001930434,"domain_scores_codex":[0.9969178,0.001209507,0.0008115508,0.0003523457,0.00008457072,0.0006242237],"domain_scores_gemma":[0.9979464,0.0001610817,0.0009166838,0.0006131395,0.0002221016,0.0001405806],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001627871,0.001456216,0.0366932,0.0001210712,0.001388666,0.0003198867,0.001251193,0.000002300207,0.4523444,0.0003495573,0.4988294,0.005616203],"study_design_scores_gemma":[0.03140626,0.005272289,0.1371084,0.0008989308,0.007298256,0.0007729671,0.02627606,0.0002512497,0.142224,0.00218257,0.6420797,0.004229389],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883478,0.001635717,0.0005761329,0.005386522,0.002028542,0.0003605704,0.0006638963,0.00004978298,0.0009509891],"genre_scores_gemma":[0.9816306,0.0006232064,0.00008210687,0.01083021,0.00005114288,0.0000136038,0.0006212206,0.00003528161,0.006112618],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3101205,"threshold_uncertainty_score":0.9998587,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009062197174075321,"score_gpt":0.233920293275799,"score_spread":0.2248580961017237,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}