{"id":"W4410403199","doi":"10.1128/spectrum.01702-24","title":"MALDI-TOF lipidomics rapidly detects modification of 2-hydroxymyristate lipid A, a potential virulence trait in <i>Enterobacter bugandensis</i>","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Bruker (Canada)","funders":"Agence Nationale de la Recherche; Wellcome Trust","keywords":"Enterobacter cloacae; Lipid A; Virulence; Biology; Enterobacter; Microbiology; Gene; Genetics; Enterobacteriaceae; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002015484,0.0006235422,0.0002943181,0.0006962795,0.0002128194,0.0005307194,0.0002083254,0.0004830447,0.0008951447],"category_scores_gemma":[0.0003661216,0.0001636731,0.0002104801,0.0004392649,0.0001487556,0.0003504839,0.0003200126,0.0002956576,0.0005245436],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001728396,"about_ca_system_score_gemma":0.0001313266,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001084562,"about_ca_topic_score_gemma":0.001261057,"domain_scores_codex":[0.9997609,0.00002942985,0.00001707651,0.00008018837,0.00007638198,0.00003600656],"domain_scores_gemma":[0.9998153,0.0000316787,0.00006203572,0.00001075076,0.00005228532,0.00002796769],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009375446,0.000019369,0.003545429,0.00001671087,0.000004391249,0.00005233616,0.00002160564,0.00002382446,0.9944636,0.00000754112,0.00004244488,0.001708945],"study_design_scores_gemma":[0.00001375304,0.0004765423,0.1223564,0.00001905426,0.00003479152,0.0011578,0.0004146947,0.002716378,0.8700284,0.00006857606,0.002690892,0.0000227724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931054,0.0004922845,0.003766545,0.0001072949,0.00002177796,0.00003485446,0.00143225,0.0001765003,0.0008631782],"genre_scores_gemma":[0.9838725,0.0004406273,0.01161723,0.0001103819,0.00001296787,0.0000371937,0.002480345,0.0000383199,0.001390322],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001084562,"threshold_uncertainty_score":0.002994537,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005446738702466948,"score_gpt":0.239938831822209,"score_spread":0.234492093119742,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}