{"id":"W4410403199","doi":"10.1128/spectrum.01702-24","title":"MALDI-TOF lipidomics rapidly detects modification of 2-hydroxymyristate lipid A, a potential virulence trait in <i>Enterobacter bugandensis</i>","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Bruker (Canada)","funders":"Agence Nationale de la Recherche; Wellcome Trust","keywords":"Enterobacter cloacae; Lipid A; Virulence; Biology; Enterobacter; Microbiology; Gene; Genetics; Enterobacteriaceae; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002456285,0.0002534887,0.000352103,0.0002241248,0.000057481,0.00002792057,0.0004501371,0.0003055231,0.00005164632],"category_scores_gemma":[0.00003033094,0.0002556752,0.000163293,0.0002059793,0.0002578882,0.00001086812,0.0002352579,0.0002330512,0.00001701089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004825865,"about_ca_system_score_gemma":0.0001112595,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008816383,"about_ca_topic_score_gemma":0.0005470064,"domain_scores_codex":[0.9981101,0.0001908897,0.0005129529,0.0006097413,0.00005254611,0.0005238054],"domain_scores_gemma":[0.9991917,0.00001657801,0.000148639,0.000525431,0.00006125083,0.00005637658],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007045878,0.000170305,0.009122966,0.00005264594,0.00008852511,0.000004876979,0.000038962,0.00004422984,0.9884626,0.00004604346,0.0006158793,0.0006483789],"study_design_scores_gemma":[0.001931464,0.0003346085,0.01528846,0.00006719909,0.00002495775,0.0000394638,0.00005101594,0.00005072689,0.9745064,0.0001248209,0.007342016,0.0002388359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959885,0.0002970372,0.002007928,0.0006321845,0.0003637932,0.0003407135,0.0001144147,0.00001517081,0.0002402511],"genre_scores_gemma":[0.9977016,0.0003698696,0.0002436813,0.0003974774,0.0001127426,0.00003035672,0.0003516623,0.00002209673,0.0007704408],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01395617,"threshold_uncertainty_score":0.9999896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005446738702466948,"score_gpt":0.239938831822209,"score_spread":0.234492093119742,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}