{"id":"W4410411044","doi":"10.1099/acmi.0.000964.v3","title":"Classification of unsequenced Mycobacterium tuberculosis strains in a high-burden setting using a pairwise logistic regression approach","year":2025,"lang":"en","type":"article","venue":"Access Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Foundation for the National Institutes of Health","keywords":"Pairwise comparison; Logistic regression; Mycobacterium tuberculosis; Mycobacterium; Microbiology; Tuberculosis; Biology; Statistics; Medicine; Mathematics; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007613852,0.0002143785,0.0007202829,0.0005867227,0.00006637823,0.00001490336,0.0003216026,0.0003943972,0.00005310026],"category_scores_gemma":[0.001755766,0.0001684899,0.0001072125,0.0006762716,0.0003890273,0.0001183452,0.000222182,0.0004180027,0.000004357768],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002665785,"about_ca_system_score_gemma":0.0003741061,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001854481,"about_ca_topic_score_gemma":0.0001199217,"domain_scores_codex":[0.9975033,0.0006040388,0.000724247,0.0005579976,0.00006205429,0.000548406],"domain_scores_gemma":[0.9986112,0.0004583994,0.0002299203,0.0004512545,0.0001654487,0.00008375625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002438758,0.000139141,0.1409288,0.0004724063,0.00009228156,0.00001533362,0.0000931267,0.0001890023,0.8549334,0.0005201828,0.00055027,0.001822147],"study_design_scores_gemma":[0.002926869,0.0003182794,0.9554807,0.001550514,0.0002199002,0.0002161141,0.0005514125,0.01351089,0.02349455,0.0009403927,0.0004098765,0.0003804825],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930833,0.000412312,0.001514212,0.003490725,0.0001247267,0.0005781501,0.0000470443,0.00003948935,0.0007100693],"genre_scores_gemma":[0.9960381,0.0002221799,0.00268944,0.0004751374,0.0000690978,0.00004792004,0.0003698684,0.00001506207,0.0000732389],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8314388,"threshold_uncertainty_score":0.6870819,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07639185174174953,"score_gpt":0.3875468419427077,"score_spread":0.3111549902009582,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}