{"id":"W4410441489","doi":"10.1128/spectrum.02849-24","title":"In silico and in vitro comparative analysis of 79 Acinetobacter baumannii clinical isolates","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"National Research Council Canada; Canada Research Chairs","keywords":"Acinetobacter baumannii; Multilocus sequence typing; Biology; Antibiotic resistance; Microbiology; In silico; Acinetobacter; Prophage; Phage therapy; Typing; Antibiotics; Genetics; Bacteria; Bacteriophage; Gene; Pseudomonas aeruginosa; Genotype; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003307445,0.000208695,0.0007577309,0.0002778939,0.00002477809,0.00001014231,0.0002133857,0.0003105719,0.00002268587],"category_scores_gemma":[0.00003146188,0.0001969338,0.00016483,0.0005166715,0.0004375701,0.000005699706,0.0001561081,0.0001843574,0.000003832358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001982603,"about_ca_system_score_gemma":0.00005299969,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005761924,"about_ca_topic_score_gemma":0.001250378,"domain_scores_codex":[0.9981726,0.0002181002,0.0006810448,0.0005837318,0.00001995692,0.0003245736],"domain_scores_gemma":[0.9993191,0.00008675799,0.0001539052,0.0003771447,0.00002906359,0.00003403358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005421276,0.0001065344,0.2567772,0.00001124552,0.0003441478,0.000003013549,0.00002457449,0.00001370516,0.7410579,0.00006279799,0.001030763,0.00002590202],"study_design_scores_gemma":[0.001303287,0.0001618627,0.2754093,0.00002831801,0.0002066399,0.000006828212,0.00008653028,0.00007296973,0.7078245,0.00009022041,0.01455404,0.0002554634],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966031,0.00125721,0.00009124271,0.0005025101,0.0001802012,0.0001830304,0.00008725325,0.000005333969,0.001090163],"genre_scores_gemma":[0.9975593,0.000335777,0.0003110157,0.0009407977,0.00003502444,0.000003914161,0.0002088517,0.000007006461,0.0005982903],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03323345,"threshold_uncertainty_score":0.8030728,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00941717829794454,"score_gpt":0.2959130303898501,"score_spread":0.2864958520919055,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}