{"id":"W4410441489","doi":"10.1128/spectrum.02849-24","title":"<i>In silico</i> and <i>in vitro</i> comparative analysis of 79 <i>Acinetobacter baumannii</i> clinical isolates","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"National Research Council Canada; Canada Research Chairs","keywords":"Acinetobacter baumannii; Multilocus sequence typing; Biology; Antibiotic resistance; Microbiology; In silico; Acinetobacter; Prophage; Phage therapy; Typing; Antibiotics; Genetics; Bacteria; Bacteriophage; Gene; Pseudomonas aeruginosa; Genotype; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005715572,0.0005383712,0.0006507021,0.001135228,0.0003419474,0.0008166502,0.0003038537,0.000514516,0.0009745117],"category_scores_gemma":[0.001261881,0.0001963209,0.000952684,0.001615364,0.0002956032,0.000291285,0.0004080816,0.0003929859,0.0007151221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002267567,"about_ca_system_score_gemma":0.0004556889,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002467853,"about_ca_topic_score_gemma":0.001731194,"domain_scores_codex":[0.9986315,0.0003213036,0.0002211309,0.0003138273,0.00034486,0.0001671951],"domain_scores_gemma":[0.9986991,0.0004142138,0.0002985787,0.0001172735,0.0003737031,0.00009710898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004505744,0.0002266555,0.03728909,0.0004162775,0.0001198027,0.0004030183,0.0003864834,0.0009172413,0.9530764,0.00009006092,0.000347479,0.006276886],"study_design_scores_gemma":[0.00002202867,0.001509784,0.2422585,0.00007536325,0.0006398952,0.003624023,0.001419464,0.004042036,0.7388968,0.0001457925,0.007294732,0.00007162656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885677,0.0009148237,0.002913933,0.0001381095,0.00004117329,0.0001282076,0.005542734,0.00007519004,0.001678095],"genre_scores_gemma":[0.9766896,0.000915332,0.008607237,0.000146844,0.00005081292,0.0001413155,0.01253458,0.00005430892,0.0008600598],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002467853,"threshold_uncertainty_score":0.004907012,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00941717829794454,"score_gpt":0.2959130303898501,"score_spread":0.2864958520919055,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}