{"id":"W4410520471","doi":"10.3390/pathogens14050499","title":"High Prevalence and Genetic Heterogeneity of Anaplasma marginale in Smallholder Bovine Populations of Pakistan, and Its Implications","year":2025,"lang":"en","type":"article","venue":"Pathogens","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Veterinary medicine; Anaplasmosis; Herd; Population; Phylogenetic tree; Animal science; Virology; Gene; Genetics; Tick; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005811765,0.00009028605,0.0001859596,0.0001386095,0.00005395323,0.000003183798,0.00006683971,0.00008211167,0.00004700464],"category_scores_gemma":[0.00006892815,0.00009337111,0.00002999021,0.0001837554,0.0001109163,0.00002863334,0.00006777778,0.00005821751,0.000002212345],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001602603,"about_ca_system_score_gemma":0.00003823472,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001063411,"about_ca_topic_score_gemma":0.0005969506,"domain_scores_codex":[0.9992905,0.00009186718,0.0002691362,0.0002051001,0.00001465729,0.0001287242],"domain_scores_gemma":[0.9995456,0.00007635873,0.00009091142,0.0001960841,0.00007559073,0.00001550596],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002416838,0.0001081246,0.7273231,0.0001361115,0.00003662155,9.335073e-7,0.0000368929,0.00001866157,0.2684051,0.003372857,0.00002051153,0.0005170142],"study_design_scores_gemma":[0.0004306357,0.00007578018,0.9770954,0.00004173988,0.00008196564,0.00002076736,0.00001318001,0.000009005757,0.02165994,0.0004371433,0.00006736585,0.00006709969],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903396,0.008600742,0.0001057973,0.00008723269,0.00006222037,0.0002399273,0.0004804129,0.00001436861,0.00006974736],"genre_scores_gemma":[0.9992301,0.000423972,0.0001627334,0.00002127005,0.000002734369,0.00003099243,0.0000294822,0.000005494297,0.00009322521],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2497723,"threshold_uncertainty_score":0.3807563,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01800894420897573,"score_gpt":0.2776111195495256,"score_spread":0.2596021753405498,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}