{"id":"W4410614381","doi":"10.1038/s41522-025-00716-8","title":"Pathogenicity of commensal gut biofilm in prefrail aging","year":2025,"lang":"en","type":"article","venue":"npj Biofilms and Microbiomes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"European Regional Development Fund; Institut National de la Santé et de la Recherche Médicale; Région Occitanie Pyrénées-Méditerranée; Agence Nationale de la Recherche; Pfizer","keywords":"Biofilm; Pathogenicity; Microbiology; Pathogenicity island; Biology; Bacteria; Genetics; Salmonella","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003322376,0.0002792147,0.0002976257,0.0003570171,0.0002229969,0.0004377179,0.0001295083,0.000355351,0.0005698883],"category_scores_gemma":[0.0004347592,0.0001551644,0.0002300807,0.0001461411,0.0002283161,0.0002403235,0.0005338847,0.0004535137,0.0001158953],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001157188,"about_ca_system_score_gemma":0.0002003062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009824857,"about_ca_topic_score_gemma":0.001437732,"domain_scores_codex":[0.9998282,0.00003781022,0.00001164884,0.00004290539,0.00004305607,0.0000362694],"domain_scores_gemma":[0.9997658,0.00002478353,0.00007562484,0.0000245402,0.00005239574,0.00005677911],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009334177,0.0001273766,0.08040742,0.0001870884,0.00005537256,0.0003167698,0.0003568008,0.000147567,0.9010411,0.0001769911,0.0002017309,0.0160484],"study_design_scores_gemma":[0.00002537662,0.002080766,0.8197129,0.0001112979,0.0001372524,0.001818568,0.001030227,0.002433337,0.169251,0.0006102216,0.002748585,0.00004042985],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967738,0.001388717,0.001207815,0.00006247955,0.00001946379,0.00002001624,0.000181154,0.00001748771,0.0003290685],"genre_scores_gemma":[0.9979539,0.0005482139,0.0009519254,0.00003594748,0.000009283885,0.00001122374,0.0001833805,0.000004553616,0.0003016147],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009824857,"threshold_uncertainty_score":0.001953483,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004800390071963946,"score_gpt":0.2587133129432024,"score_spread":0.2539129228712385,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}