{"id":"W4410622509","doi":"10.12688/wellcomeopenres.24165.1","title":"The chromosomal genome sequence of the fragile freshwater sponge, Eunapius fragilis (Leidy, 1851) and its associated microbial metagenome sequences","year":2025,"lang":"en","type":"preprint","venue":"Wellcome Open Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Wellcome Trust; Gordon and Betty Moore Foundation","keywords":"Metagenomics; Biology; Sponge; Whole genome sequencing; Genome; Computational biology; Evolutionary biology; Ecology; Genetics; Gene; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","open_science"],"consensus_categories":[],"category_scores_codex":[0.003015443,0.0004021851,0.0005690017,0.00009760338,0.001239563,0.0005783428,0.004060859,0.000488797,0.0001306714],"category_scores_gemma":[0.0004637493,0.0002600977,0.0002245948,0.0003131738,0.001149396,0.00000264433,0.01449681,0.000962645,0.000009151982],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008726685,"about_ca_system_score_gemma":0.001021283,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001575399,"about_ca_topic_score_gemma":0.002452804,"domain_scores_codex":[0.9959505,0.001101853,0.0005922133,0.001037418,0.0005383641,0.0007796167],"domain_scores_gemma":[0.9973512,0.0002509684,0.0002833697,0.001288903,0.0007106612,0.0001149282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001252378,0.00007683197,0.001595248,0.0001343825,0.000824354,0.000008479151,0.0004092524,0.0002225916,0.9939742,0.0002963273,0.002042916,0.0002901621],"study_design_scores_gemma":[0.001331428,0.0005073931,0.02301339,0.0003618585,0.0001988632,0.00002039853,0.0004335474,0.000267202,0.3567085,0.003807966,0.612288,0.001061462],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9708831,0.01656601,0.000001363494,0.001088924,0.0006599735,0.002010384,0.004655187,0.000003131881,0.004131967],"genre_scores_gemma":[0.9761707,0.006446898,0.0001250934,0.0001175914,0.0002065759,0.000261175,0.0002553718,0.00003717044,0.01637939],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6372657,"threshold_uncertainty_score":0.9999851,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08295812723582834,"score_gpt":0.3467010288124517,"score_spread":0.2637429015766234,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}