{"id":"W4410642509","doi":"10.1007/s00122-025-04917-9","title":"Genome-wide association analyses for revealing QTN, QTN-by-environment and QTN-by-QTN interactions in soybean phenology","year":2025,"lang":"en","type":"article","venue":"Theoretical and Applied Genetics","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Quantitative trait locus; Phenology; Genome-wide association study; Genetics; Agronomy; Genotype; Single-nucleotide polymorphism; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002444964,0.000156813,0.0002160447,0.00002012673,0.000186989,0.00006299701,0.000103349,0.0001207007,0.00009301581],"category_scores_gemma":[0.0000693734,0.00008358595,0.00003974363,0.0001415657,0.0001619547,0.00001633271,0.00008503872,0.0001271498,0.000003789037],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000522339,"about_ca_system_score_gemma":0.000004500369,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009699471,"about_ca_topic_score_gemma":0.00002182872,"domain_scores_codex":[0.9989138,0.00005627917,0.0002910141,0.0003505616,0.0001109134,0.0002774165],"domain_scores_gemma":[0.9991398,0.0006164048,0.00008799551,0.00005704699,0.000025489,0.00007324242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.000106069,0.0002173114,0.0269298,0.00002663004,0.00008152097,2.923818e-7,0.0002293454,0.00007452348,0.9037184,0.02702016,0.00155967,0.04003625],"study_design_scores_gemma":[0.002255398,0.0006581299,0.3867345,0.00007404423,0.0003922638,0.000001860307,0.003547434,0.003655224,0.1363977,0.4060882,0.05896519,0.001229961],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933322,0.0007347945,0.001252302,0.003014819,0.00004274118,0.0003532599,0.00006922724,0.00001892118,0.001181699],"genre_scores_gemma":[0.99762,0.0006305141,0.0004356448,0.0006683573,0.00006839095,0.00005907584,0.0001672759,0.000002278265,0.0003483942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7673208,"threshold_uncertainty_score":0.3408536,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01567759932645516,"score_gpt":0.2543421351577877,"score_spread":0.2386645358313325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}