{"id":"W4410764292","doi":"10.1101/2025.05.22.655539","title":"Accumulation of a biparentally-inherited Neptune transposable element in natural Killifish hybrids ( <i>Fundulus diaphanus</i> × <i>F. heteroclitus</i> )","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Moncton","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Natural Sciences and Engineering Research Council of Canada; Mitacs; Vetenskapsrådet; Marie Curie; New Brunswick Innovation Foundation","keywords":"Fundulus; Killifish; Biology; Transposable element; Fishery; Genetics; Genome; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007856058,0.000208359,0.0001146499,0.0005147709,0.0001955829,0.0001766228,0.0001734884,0.0002758981,0.001502442],"category_scores_gemma":[0.00009811821,0.00009721732,0.0001289401,0.0001443672,0.0002152922,0.00007969078,0.0002683999,0.0003743996,0.0002379792],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002391673,"about_ca_system_score_gemma":0.00007639624,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001367149,"about_ca_topic_score_gemma":0.002084745,"domain_scores_codex":[0.9998828,0.00001084569,0.000007258746,0.00005146052,0.00002617924,0.0000214111],"domain_scores_gemma":[0.9997914,0.00004562316,0.00005634697,0.00001819424,0.00001710869,0.0000712603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002249287,0.000004493194,0.0006735871,0.00000534138,0.000002803586,0.00002564889,0.00001433493,0.000005429635,0.9989416,0.0000109892,0.000004231319,0.0002889744],"study_design_scores_gemma":[0.000007713717,0.0002564951,0.2035007,0.000005435,0.00003215928,0.0008283281,0.0001562867,0.0004113203,0.7932296,0.00004732688,0.001513512,0.0000111503],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983569,0.0001356886,0.0005785453,0.00001455869,0.000004059131,0.000005270589,0.0003155396,0.00002536901,0.0005640688],"genre_scores_gemma":[0.9964606,0.00005407348,0.0005021575,0.00002268667,0.000002884987,0.00001000769,0.000765605,0.00002266162,0.002159284],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001502442,"threshold_uncertainty_score":0.005026221,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02341588844613941,"score_gpt":0.2363302641049404,"score_spread":0.2129143756588009,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}