{"id":"W4410869056","doi":"10.3390/v17060770","title":"The Spread of Endogenous Retroviruses in Populations Infected by Exogenous Viruses","year":2025,"lang":"en","type":"article","venue":"Viruses","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Population; Fixation (population genetics); Virulence; Genome; Endogenous retrovirus; Genetics; DNA; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004013672,0.0004167217,0.0003729111,0.000513541,0.00033732,0.0009165446,0.0008006545,0.001093781,0.002132155],"category_scores_gemma":[0.001957693,0.0002810795,0.0006555355,0.0002934615,0.0006203871,0.001177396,0.0005425083,0.0008214238,0.0003221621],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007839947,"about_ca_system_score_gemma":0.0003540822,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003750443,"about_ca_topic_score_gemma":0.001476291,"domain_scores_codex":[0.9997963,0.00004326932,0.000009870513,0.00005292385,0.00005939571,0.00003829503],"domain_scores_gemma":[0.9994447,0.0002674652,0.0001256664,0.00004666653,0.00006017878,0.00005532051],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","study_design_scores_codex":[0.0001055198,0.0001202945,0.01579538,0.00009021971,0.00006953114,0.0005584864,0.0001658028,0.879622,0.02932915,0.06445029,0.000413684,0.009279629],"study_design_scores_gemma":[0.00001941639,0.00007869797,0.00208468,0.00001330475,0.00002110429,0.0002056354,0.00004754646,0.9850194,0.00372771,0.008084225,0.000677695,0.00002050533],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7640721,0.001085527,0.2244069,0.0001921254,0.00005911694,0.00005746605,0.0002034888,0.0001698772,0.009753385],"genre_scores_gemma":[0.9773895,0.000634953,0.01568264,0.00005767604,0.00002730444,0.00004732002,0.0002068443,0.00004703939,0.005906789],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003750443,"threshold_uncertainty_score":0.007457256,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0255611428902156,"score_gpt":0.321235171881656,"score_spread":0.2956740289914404,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}