{"id":"W4410886520","doi":"10.1126/sciadv.adu6565","title":"TAC-C uncovers open chromatin interaction in crops and SPL-mediated photosynthesis regulation","year":2025,"lang":"en","type":"article","venue":"Science Advances","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Chromatin; Biology; Gene; Genetics; ChIA-PET; Transposable element; Computational biology; Regulation of gene expression; Population; Mutant; Cell biology; Chromatin remodeling","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001294465,0.0001898023,0.0001526737,0.0003007806,0.0001652054,0.0002419598,0.0002416248,0.0002628734,0.001253574],"category_scores_gemma":[0.0001298513,0.0001886814,0.0002405385,0.0002188823,0.0003174728,0.0001703888,0.000493585,0.000454073,0.0002818765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000312741,"about_ca_system_score_gemma":0.0001775366,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001034107,"about_ca_topic_score_gemma":0.003149334,"domain_scores_codex":[0.9998854,0.00000754246,0.000006056643,0.000051507,0.00002701157,0.00002240771],"domain_scores_gemma":[0.9998448,0.00002835185,0.00005200549,0.0000270021,0.00001460585,0.000033216],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004716136,0.000008724058,0.001617756,0.00001784087,0.000007556157,0.00003754488,0.00002158508,0.0001232728,0.9957988,0.0002322736,0.00003335329,0.002054108],"study_design_scores_gemma":[0.00002301223,0.000132548,0.1318505,0.00001532686,0.00005826902,0.0008332078,0.0001152749,0.01204376,0.8490142,0.0008844525,0.005005914,0.00002363994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872284,0.0005355167,0.01031842,0.00006145139,0.0000134685,0.00001037986,0.000525234,0.0001360586,0.001171151],"genre_scores_gemma":[0.9947038,0.0001161863,0.003522474,0.00006775712,0.000003655841,0.000009570639,0.00066758,0.00003135256,0.000877635],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001253574,"threshold_uncertainty_score":0.004193604,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01187859969782456,"score_gpt":0.2688184201274029,"score_spread":0.2569398204295784,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}