{"id":"W4410907335","doi":"10.1002/ece3.71461","title":"Effect of Marine Reference on Inferred Evolutionary Patterns of Freshwater Stickleback","year":2025,"lang":"en","type":"article","venue":"Ecology and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; National Institutes of Health; National Science Foundation","keywords":"Stickleback; Biology; Parallel evolution; Divergence (linguistics); Freshwater fish; Population; Ecology; Geographical distance; Fishery; Fish <Actinopterygii>; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001101671,0.0001993748,0.0003422098,0.0009975876,0.0003985575,0.0005319638,0.0002743696,0.0002391019,0.0005450927],"category_scores_gemma":[0.003322472,0.0001553328,0.0002782564,0.0006252537,0.0006241701,0.0002975193,0.0005957116,0.0002470347,0.00005788081],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002893169,"about_ca_system_score_gemma":0.0001646278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003127308,"about_ca_topic_score_gemma":0.007833525,"domain_scores_codex":[0.9993697,0.0002808018,0.00004849218,0.0002128888,0.00005877013,0.00002948223],"domain_scores_gemma":[0.9981424,0.00086531,0.0005500647,0.0002086904,0.0001056658,0.0001278773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004105487,0.00001997353,0.9572853,0.0000434089,0.0002675704,0.0001719494,0.0004872282,0.002927423,0.0298587,0.0003602557,0.0000344347,0.008133207],"study_design_scores_gemma":[0.000004465808,0.00009319442,0.9945713,0.000006055356,0.00004288454,0.00009382553,0.0001344376,0.003995788,0.0008180857,0.0001666648,0.00006418954,0.000009253828],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994568,0.00004215792,0.0003859552,0.000003394449,6.562884e-7,6.637466e-7,0.00001946967,0.000004232222,0.0000865688],"genre_scores_gemma":[0.9996421,0.00001294237,0.0002725645,0.000003226376,7.571232e-7,0.00000122024,0.0000484048,0.000001719502,0.00001715056],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003127308,"threshold_uncertainty_score":0.006218195,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005323681539089572,"score_gpt":0.231147946332322,"score_spread":0.2258242647932324,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}