{"id":"W4410923121","doi":"10.1111/mec.17814","title":"<scp>3D</scp> Genome Constrains Breakpoints of Inversions That Can Act as Barriers to Gene Flow in the Stickleback","year":2025,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; Institute of Genetics; Japan Science and Technology Agency; Japan Society for the Promotion of Science","keywords":"Biology; Stickleback; Genome; Gene flow; Gasterosteus; Genetics; Evolutionary biology; Population; Three-spined stickleback; Chromosome; Genetic algorithm; Genome evolution; Gene; Genetic variation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002485474,0.0003605331,0.0004852352,0.0006525991,0.0006613705,0.0009429842,0.0004515053,0.000513018,0.008751541],"category_scores_gemma":[0.001180021,0.0004168176,0.0005887249,0.0008349447,0.0004248637,0.0004754768,0.0007380508,0.0009823991,0.002710845],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003801149,"about_ca_system_score_gemma":0.0004017318,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007070682,"about_ca_topic_score_gemma":0.01166993,"domain_scores_codex":[0.9998218,0.00001978168,0.00001273437,0.00006055729,0.00006412114,0.00002091547],"domain_scores_gemma":[0.9992735,0.0002513431,0.0002149654,0.0001279022,0.00008705458,0.00004517973],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000391461,0.00004800571,0.0212463,0.0008748511,0.0001265228,0.001202596,0.000549814,0.00918322,0.9215108,0.004476581,0.01070754,0.0296823],"study_design_scores_gemma":[0.00009819766,0.0002514013,0.4342851,0.0002689591,0.0002760435,0.002527332,0.0005982388,0.07950953,0.3075834,0.008651895,0.1657593,0.000190588],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7853881,0.001829983,0.1201367,0.001061442,0.0004113961,0.0001277176,0.05842259,0.008616261,0.02400591],"genre_scores_gemma":[0.8573619,0.0006881426,0.07297854,0.0009286324,0.0001080946,0.0002740135,0.0612634,0.002047781,0.004349411],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008751541,"threshold_uncertainty_score":0.02927685,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006305147838457185,"score_gpt":0.2253362264763964,"score_spread":0.2190310786379392,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}